FastQCFastQC Report
Sat 31 Dec 2022
SRR5842891.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842891.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29453
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGGGGGCTTTTGCGCATGTGCAGAGTGAACCGCGGAGAAGGT390.132414355074186No Hit
TAAGTTGGGACCGGAACTGGTCCTCCTCGAGCAACACAGGGTCTCT360.12222863545309476No Hit
ATTTTTGGGGGGAATTCCTCCTCATGTGAGCGGATCACTATCTACA350.11883339557939769No Hit
CTACATAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.11883339557939769No Hit
CTTCATGGGGCACAGATAGCTCACTTATAGACTGTTTGCCTAGCTT330.11204291583200353No Hit
AAAGCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA330.11204291583200353No Hit
CACGTCGGGGATATCTCTCAGACCAGCAATCGTGGTTCCGGAAGCC330.11204291583200353No Hit
AACTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATGG320.10864767595830645No Hit
AAATCGGGGTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATTGC320.10864767595830645No Hit
ACTTATGGGAGGAACATCCTCGTGTTAGATATTGAGGCTGCTTCGT320.10864767595830645No Hit
TTATATGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT320.10864767595830645No Hit
GTGCAAGGGGTGGTGCTCTTCATCTTCGCCATCCTCTGCATCTTCA320.10864767595830645No Hit
TTTATTGGGGGAGAAGGTGAAGATGGCTGCCGCCCGGGCTGCGGCC310.10525243608460937No Hit
CCTACAGGGGGACAAAGATATCCCTGATTCTATGCAATAACAGCCA310.10525243608460937No Hit
TCACATGGGAACCTGTTTCTTTGAGTGTAACCCGGAGGTTGTAATA310.10525243608460937No Hit
GATAATGGGGCTCTGCTCTGAGCAAATGGCTGCTCTTCGCATGCTG310.10525243608460937No Hit
CTTATTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.10525243608460937No Hit
CGTCAAGGGGAGGGCAGGGTGTATATCTCTCAGACCAGCAATCGTG310.10525243608460937No Hit
GTTTTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC300.10185719621091231No Hit
AAACCTTGGTGTGGTCACTGCAAGCAGCTAGCCCCCATTTGGGATA300.10185719621091231No Hit
GAGCAAGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT300.10185719621091231No Hit
TTACTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC300.10185719621091231No Hit
ACACCAGTTTCAGCACTACTACACTCAAGTACAATAGTAGTTGCAG300.10185719621091231No Hit
GTTCCCGGGGAAGATGATGTGTCAAGTGCTGAGCCCTGCCTCCCTC300.10185719621091231No Hit
GTACTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT300.10185719621091231No Hit
CAAAATGGGGGGAGTTGACCAGCCAACCGACTCTGCATTCATCTAG300.10185719621091231No Hit
ATGCAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC300.10185719621091231No Hit
GGCTCAGGGGTGTCGGCACGAAGTGTCTTCCGATGCAGTGTCCAGT300.10185719621091231No Hit
GGAACGGGATTCTCTCTCACTTCTAACATACATACCAGTTTTATGC300.10185719621091231No Hit
ATCGCAGGGGAGAAGCTGCTGGCGGAGGACAAGGAGAACTAACTCT300.10185719621091231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)