FastQCFastQC Report
Sat 31 Dec 2022
SRR5842888.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842888.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37096
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.1563510890662066No Hit
GCTCATGGGAAACATTGCTGACAGAATAATCCAGTTGGTCCTCTCA570.15365538063403064No Hit
TCTTCTGGGACTGTAACTGCCTTCAGACACACCAGAAGAGGGCATC560.15095967220185466No Hit
CTATCTGGGATTGATTTTAAATGGTTAATGCCAAAGGGGCAAAGTT530.14287254690532672No Hit
AACATGGGGTCTATAGGACTGTGACTAGCTATTCTGAATTTGGGTG530.14287254690532672No Hit
TGCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.13748113004097479No Hit
ATATTAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC510.13748113004097479No Hit
GCACAAGGGGAACGAACACTAACAGGCTGATGATTGTTGGTGTCTG510.13748113004097479No Hit
AACCTGGGAGAGGCGGTGGACAGCGAGCGGGCATGAGCGCGTCCCT500.13478542160879878No Hit
ACTATAGGGGGGTCGCATTCGGGACCAGCTTTCTGCTGTAGCTAAT500.13478542160879878No Hit
CTTGCAGGGGAATATATTTCAGTGCATCATAATTCTTTATTTTCCC500.13478542160879878No Hit
GAACAAGGGAACTTTGCAAAGTAGTAGCCAGCGGGGGGATTTGACC500.13478542160879878No Hit
GGACCTGGGGATTGCACTTAGAGGAGATGCACAGCACGTTTTCTCC500.13478542160879878No Hit
TAACGAGGGGTTACAGATAATTGGGTAGAGTGGAGTGTATCTGCTT500.13478542160879878No Hit
AAAAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.13478542160879878No Hit
TTGACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.13478542160879878No Hit
GACTACGGGGTGCACGCCGGGCTTCTGCTGCATCTAACATTGGCGG490.13208971317662282No Hit
AAGTTTGGGGGTTTTGTCTTCTGTTTGATTTTCTGCTCTATCTTTG490.13208971317662282No Hit
TTTTACGGGGACTCTAAGGACGCTGCCGTGTTAGTTGCCCGGCACT480.12939400474444684No Hit
GTACTTGGGGATAAAGGAAATTTGGCTTGTTGTGTGACACAACAGA480.12939400474444684No Hit
ACATGTGGGGAAGTACCACCAGGGCTCTGCAGTCCGTGGTCTAACA480.12939400474444684No Hit
GTCACTGGGGTGGTGTGTGTGCAACATAGACTGTTCTCAAACCAAC480.12939400474444684No Hit
TACTAAGGGAAGACTGGGAATGTGGGCCCCACTGGGGGGAGCGGAG480.12939400474444684No Hit
GCTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.12939400474444684No Hit
ACATAAGGGATTGTATTGTATTAAAAACCAGGGAGGGTGGGTGTAG480.12939400474444684No Hit
TGCATCAGGGAAGGCAGGAAGATGGTGGCCGCAAAGAAGACGAAAA480.12939400474444684No Hit
ACACCTGGGGTGGCCCCTACCTCTTATGTCTTCTGGAGCAGATGCT480.12939400474444684No Hit
TAGACAGGCCATGTTGCTTGTAATTGACTTCAGGTATGCAGTCTGT470.12669829631227086No Hit
ACTCAAGGGGTGAATGGACAGAGGCAAGCCCTGGCTGTATGGGCGT470.12669829631227086No Hit
ACGTTTGGGAGGAAGACTCGCCCTTGTTGCTGAGGTGCAAGAGCCT470.12669829631227086No Hit
TTACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.12669829631227086No Hit
CTTACCGGGCAGGTAGAAGTCAGAGCCATTGTTTGCAGGGAAAGTG470.12669829631227086No Hit
CCAAGTGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC470.12669829631227086No Hit
TCGCATGGGCGGACGCTATGGCGTTCTGCGCTCCCCCGGCCTACCT460.1240025878800949No Hit
AAAACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.1240025878800949No Hit
GCAACGGGGATGCATGACCTCAGCAGTGTGCCACAAAGCTCTTCTC460.1240025878800949No Hit
ATGCTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.1240025878800949No Hit
TTAAGAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG460.1240025878800949No Hit
TCTTCAGGGGTGGCAAACACAGACAAGAAATCCTATGAACCCCAGG460.1240025878800949No Hit
ACATCTACAGACACATTCTGGATACCGAGTAGAACTTGATTTCCCT460.1240025878800949No Hit
CTCATTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC460.1240025878800949No Hit
ACTAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.1240025878800949No Hit
AGCACAGGGTCTTTCTTGGGTGTGATCTAAGGCCACATTCTGGCAG460.1240025878800949No Hit
GCTGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTT460.1240025878800949No Hit
AGGACAGGGGATCCTAGGCCGGAGGGAGTTATTCCACCTGCACCTT460.1240025878800949No Hit
TTGACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.1240025878800949No Hit
CTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT450.12130687944791892No Hit
CTGACAGGGTGAGACCAAGATCATGGTACTGCAGCCTGCGGGGGCT450.12130687944791892No Hit
TATACCGGGAATCACTATAGCCCTTGGGAAGGCTTGGGCTATTTAC450.12130687944791892No Hit
TTATAGGGGGTCAAGGATGAATGCTGCAGACAGAACAAGATGCTGT450.12130687944791892No Hit
ACATAGGGGATGTGGCACTTTTTCAAGAATAAAGGAAATAGTTTTG450.12130687944791892No Hit
GCCGTTCGGGAAAGAGATGAGTAAGCTCAATCAGAACCTCAATGAT450.12130687944791892No Hit
TTTCTTGGGGGCATCAAGAAACCACGGTCGCAAAGATACGAATCTC440.11861117101574292No Hit
ATATTGGGGACACTTAGTCTTTTTACTTTTGAGTTTTTTGTTTTGT440.11861117101574292No Hit
CTAACAGGGGTGTTGTTTTGGGGTACCACACTAGCCCCTCTTTCGA440.11861117101574292No Hit
TCACTTGGGGAGGCGAAGCCGGTGTTCTCGCACTCGGGTGGCGGCC440.11861117101574292No Hit
TTATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11861117101574292No Hit
TTGCTAGGGATGTGACCTACATTTGGGAGTGCTGTCCCATTGGCTA440.11861117101574292No Hit
TATGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC440.11861117101574292No Hit
ACAAGGCGGGACTGCCGAGGAGAACCACCCCTTTTGTGTGAAGTTG440.11861117101574292No Hit
TAGCAAGGGTTAGCTGGGCCTGGAGAAGTGGGCAGTATGGTAGCGG430.11591546258356697No Hit
ACACCCGGGTCCACCCTTGCCACTGCCTGTGTGATAAATCAGAACA430.11591546258356697No Hit
GCCTTGGGGATAACATAGTTTGTCACAGCCCTGCTCTTTTGTGACT430.11591546258356697No Hit
GAATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11591546258356697No Hit
GAGCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11591546258356697No Hit
TAAATGGGGGAAGAATTCTGTTTCCTGGAATGAGCATTTCTTATTC430.11591546258356697No Hit
ATCAGGGGGGCTGGGCAGCTGTGAGAGTCCAGAGTGGGGTGGCCCT430.11591546258356697No Hit
TTGTTAGGGGATTTCTGACAGAAGCCTAGGGATTCAGGGTGTCTGG430.11591546258356697No Hit
CGATATGGGGTAACCAGATTCCAACAGTGCTTTGGACCATGGACTG430.11591546258356697No Hit
AACCCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC420.11321975415139099No Hit
AGCAAAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC420.11321975415139099No Hit
AATAATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC420.11321975415139099No Hit
TTTGCCAGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTG420.11321975415139099No Hit
TACATTGGGAGGTGTCAGTGACTGAGGAGGGAAAACAGGGATCGTC420.11321975415139099No Hit
GTTGTAGGGAAGACAACAATTGAGGAAGATAAGATCGTCTTGAAAA420.11321975415139099No Hit
AGCTATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT420.11321975415139099No Hit
GGACTTGGGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTT420.11321975415139099No Hit
ATCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.11321975415139099No Hit
TCATTTGGGGGGCACCCAGAAGTTTATATTCTTATCCTCCCAGGAT420.11321975415139099No Hit
TTAGTAGGGATGGCCACTCTGTGGCTTTGCCCACTGCTTCTGGCTG420.11321975415139099No Hit
TTCTGTGGGACTACAGCAGGGCCTGTGATGGTGGCTATGCAGCCAG420.11321975415139099No Hit
GCATTTGGGGCTTCCCAACATGGCGCAGTCGATTAACATCACGGAG420.11321975415139099No Hit
AGCAAGGGGAAATTCCTAAAGTTTATGGAAAGCACAGTAATTTTAC420.11321975415139099No Hit
AGAAATGGGATTTGTAAGGCTATAGCACAAAGGGAACATTTTTGTG420.11321975415139099No Hit
GCTTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.11321975415139099No Hit
CTACTTGGGGGTGCTGTCAGGATGAGAACATGGAAGTTTTGAACCT420.11321975415139099No Hit
CTCGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.11321975415139099No Hit
AATGTGGGGAAGGATTTGAAGGGAGGAAAGGGAAGGGAGACATGAT410.11052404571921502No Hit
TCTAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.11052404571921502No Hit
TCCTATGGGACCTTAAATTTTCCTCAGTCAGCAGTAGGAGCAATTA410.11052404571921502No Hit
CAGCTGGGGGCATAGCGCGCGTGGGTCCTAAAGTGGTGTTTCGTGG410.11052404571921502No Hit
TTGCTTGGGGGATTTGGAATTATTTCACATTTAGTTACTTACTACT410.11052404571921502No Hit
CAACACGGGGATGACCCCACCAAGTGTGTGGCCTGTCGCAACTTCT410.11052404571921502No Hit
AAGTGAGGGGTCCCTGCGTTCCTGCAACTGAGGATGTGAGCGGCAG410.11052404571921502No Hit
TAAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC410.11052404571921502No Hit
GCCGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.11052404571921502No Hit
CCATTAGGGTCAGTGTTTAGATTCTATGTGGTCAATGATGATTAAT410.11052404571921502No Hit
CTGCGCGGGATGTCGCTAAGGAAAAGGACGTAGTGTATCCTGGGAT410.11052404571921502No Hit
TCTTGCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG400.10782833728703904No Hit
TGCTATGGGAGAAGGAAGTTGTTGCCTTCTGTTTAATTACATTCAT400.10782833728703904No Hit
TATCTGGGGACTACGATATGGTATAATTCTATTCATCGTCTCGGAA400.10782833728703904No Hit
TGCCAAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG400.10782833728703904No Hit
GTTATTGGGCCAGTCTTTTGCATAACCATGCCAGCCTCCCCAGCCA400.10782833728703904No Hit
GTAATAGGGATTTTTTAAAGAGGTAAATGGGTAAATTTTACATGAC400.10782833728703904No Hit
GTTTATGGGAATATATCAATGATGACGAGACGTAATTCGTGAAGGA400.10782833728703904No Hit
TGTTCCGGGAACATAGGCGTGAATACCAAGTATGTCACTACATCAA400.10782833728703904No Hit
ATGCTAGGGACTGTTCATCCTGGTGATGTCTTTAGACAAGGTCATG400.10782833728703904No Hit
TGATCAGGGCTTGATGGAATCTGTGCTGATTGAGAACTTTCCATTC400.10782833728703904No Hit
CATATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10782833728703904No Hit
TTCGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10513262885486305No Hit
AACAGGGGGACTGCTCTGAAGTTCAAGACTTAACTTCCCTAGCTTC390.10513262885486305No Hit
TGTCTGGGACAAGAGAACATTCAGAGCTGAAGAGAAGGCTCAGCAG390.10513262885486305No Hit
CATGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10513262885486305No Hit
TATTGCGGGGGTAGTTCCATGATGGCGTCGGCGGTGCTGTCAGCGT390.10513262885486305No Hit
AACTACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT390.10513262885486305No Hit
GCTCTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC390.10513262885486305No Hit
AGCACAGGGCTCTTTCCGGTGGAGGAGTCTGGAGACGACGATCAGA390.10513262885486305No Hit
TGGTCAGGGATATAATAAAGATAATCCATGTTACCATATGGAGTGC390.10513262885486305No Hit
CCATCAGGGGAGCCGGGTGCCATGGAACCCACATGAGGACTTGTTT390.10513262885486305No Hit
ATCAGCGGGCATCCAGTCCTTTTTTCTGTCACCTCTCACATCTCTG390.10513262885486305No Hit
ATTTGAGGGGTTGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTC390.10513262885486305No Hit
GGCAGTGGGGAGGGCTAAAGCTGAGAGATTGAAAAATGCAGACCAC390.10513262885486305No Hit
TGGCATGGGCTCTGACTCTGCTACATACAGGGTCCATGTGGGCTGA390.10513262885486305No Hit
CTATATGGGACAACTGAGTTCACTCTATAGATGAGGTATTGTATCA390.10513262885486305No Hit
TAGCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT390.10513262885486305No Hit
TTTATGGGGATGGCACTAGCTCATGGCCCTCAATACAGAGTACTCG390.10513262885486305No Hit
CTTCTGGGAGAGTTCAAATCCCCATGACCCACACGAATGCTGGGTA390.10513262885486305No Hit
TCACAAGGGATAGCATAACTCCCTGGAGACACAAATTTTGCAGTGA390.10513262885486305No Hit
AACGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10513262885486305No Hit
TTATGTGGGGGAAAGCCTATCCGATTGGAATTGCAGGCTTCCTAGC390.10513262885486305No Hit
TAATTTGGGACCTAAGATGAAAATTTTCTGAACTTTGATTCTCTAT380.1024369204226871No Hit
GTTTGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA380.1024369204226871No Hit
GGCTATGGGGGGCTCAGGTACCTGCTGTACAACTTCCCCATGACCT380.1024369204226871No Hit
TTAAGCGGGGGCATTACTATACTACTAACAGACCGCAACCTAAACA380.1024369204226871No Hit
GTTAAAGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCCT380.1024369204226871No Hit
TAATCTGGGATACATAAAACTGAAATAAATGTGCAAAGACTTTGGA380.1024369204226871No Hit
ACCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.1024369204226871No Hit
ACTAGTGGGGAAACTAAACAATCATGGTGGTGACAGACTGTGTAAA380.1024369204226871No Hit
TTTAAGGGGAGAGCCCATGCTCCCACGTGTCCGTGGGCCGACATCT380.1024369204226871No Hit
ATGTGAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG380.1024369204226871No Hit
CAGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.1024369204226871No Hit
CTTAAGGGGGTAGAGCTGGTTTCTGCTTCAAGTGAAGCTGCACCTT380.1024369204226871No Hit
AACCTGGGGGAAGCGGCTTAGCGTGTGTCCTAATCTTCTCTCTGCG380.1024369204226871No Hit
ACAATGGGCGTGTAAAAGTGCCTCATTTTCTGTATCTGTTCCTCTG380.1024369204226871No Hit
GTGCCGGGTCTGGAAGTGGGACTGCAGGAGTTCTCTGGTGGCCTCG380.1024369204226871No Hit
GTGCCTGGGACCTCTCTCAATATGTAATTCGTGGGGACGATGAAGA380.1024369204226871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)