FastQCFastQC Report
Sat 31 Dec 2022
SRR5842887.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842887.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35048
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACGAGGGGTTACAGATAATTGGGTAGAGTGGAGTGTATCTGCTT600.1711937913718329No Hit
CTCATTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC520.1483679525222552No Hit
ACTAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.14551472266605797No Hit
GCACAAGGGGAACGAACACTAACAGGCTGATGATTGTTGGTGTCTG510.14551472266605797No Hit
CATGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.14266149280986076No Hit
GAATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC500.14266149280986076No Hit
CATCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.14266149280986076No Hit
GTCACTGGGGTGGTGTGTGTGCAACATAGACTGTTCTCAAACCAAC500.14266149280986076No Hit
CTAACAGGGGTGTTGTTTTGGGGTACCACACTAGCCCCTCTTTCGA500.14266149280986076No Hit
TTTCTTGGGGGCATCAAGAAACCACGGTCGCAAAGATACGAATCTC490.13980826295366355No Hit
TTGCGCGGGGACAGATACTTGATTTCAAGTTTCTTGTCACCTTGAG490.13980826295366355No Hit
GCTCATGGGAAACATTGCTGACAGAATAATCCAGTTGGTCCTCTCA490.13980826295366355No Hit
GTTTATGGGAATATATCAATGATGACGAGACGTAATTCGTGAAGGA490.13980826295366355No Hit
TACTAAGGGAAGACTGGGAATGTGGGCCCCACTGGGGGGAGCGGAG490.13980826295366355No Hit
AACACCGGGGGGCAGCTAGCTGTGCTCTGTTCTCAGTGCCTGGGCT490.13980826295366355No Hit
CTATCTGGGATTGATTTTAAATGGTTAATGCCAAAGGGGCAAAGTT480.13695503309746632No Hit
TTGAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.13410180324126914No Hit
AGAAATGGGATTTGTAAGGCTATAGCACAAAGGGAACATTTTTGTG470.13410180324126914No Hit
GCACTGTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.1312485733850719No Hit
TGCTCTGGGGATTCACTGCACAACTCCACGAAAAACAAACAGAAGG460.1312485733850719No Hit
GGACCTGGGGATTGCACTTAGAGGAGATGCACAGCACGTTTTCTCC460.1312485733850719No Hit
TCACAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.1312485733850719No Hit
TTAGTAGGGATGGCCACTCTGTGGCTTTGCCCACTGCTTCTGGCTG460.1312485733850719No Hit
ACATAAGGGATTGTATTGTATTAAAAACCAGGGAGGGTGGGTGTAG460.1312485733850719No Hit
GTGCCTGGGACCTCTCTCAATATGTAATTCGTGGGGACGATGAAGA460.1312485733850719No Hit
GCGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.1312485733850719No Hit
GCTTCAGGGGAATGATATGATTAGACAATTCCTACTCCCACTTTTT450.1283953435288747No Hit
TTTTACGGGGACTCTAAGGACGCTGCCGTGTTAGTTGCCCGGCACT450.1283953435288747No Hit
TCTTCTGGGACTGTAACTGCCTTCAGACACACCAGAAGAGGGCATC450.1283953435288747No Hit
ATGCTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA450.1283953435288747No Hit
TATATAGGGGGAGGCCGCTTGGCCCATCTGCACGCTCCTCCCAGCC450.1283953435288747No Hit
TTGCTTGGGGGATTTGGAATTATTTCACATTTAGTTACTTACTACT450.1283953435288747No Hit
TTGTTAGGGGATTTCTGACAGAAGCCTAGGGATTCAGGGTGTCTGG450.1283953435288747No Hit
GATACCGGGGCTCGCTGAGCGCCGCCAACATGGTGTTCAGGCGTTA450.1283953435288747No Hit
CCAGTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC450.1283953435288747No Hit
GCAACGGGGATGCATGACCTCAGCAGTGTGCCACAAAGCTCTTCTC440.12554211367267748No Hit
ACATCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12554211367267748No Hit
CCAAGTGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC440.12554211367267748No Hit
TTGACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12554211367267748No Hit
GCACCTGGAGATCACCCTGTCCCAGGAGCAGATCCAGAAGTACACA430.12268888381648026No Hit
AATAATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC430.12268888381648026No Hit
TGCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.12268888381648026No Hit
AAAACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.12268888381648026No Hit
ATATTAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC430.12268888381648026No Hit
GCAACTGGAGATCACCCTGTCCCAGGAGCAGATCCAGAAGTACACA430.12268888381648026No Hit
TCACTTGGGGAGGCGAAGCCGGTGTTCTCGCACTCGGGTGGCGGCC430.12268888381648026No Hit
GCATTTGGGGCTTCCCAACATGGCGCAGTCGATTAACATCACGGAG430.12268888381648026No Hit
TGTCGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.12268888381648026No Hit
ACTGTAGGGATCTTGCAGCGGGATCAGGACAGTGGACCAGGCCTTG420.11983565396028303No Hit
AACAGGGGGACTGCTCTGAAGTTCAAGACTTAACTTCCCTAGCTTC420.11983565396028303No Hit
GTACTTGGGGATAAAGGAAATTTGGCTTGTTGTGTGACACAACAGA420.11983565396028303No Hit
GTAATAGGGATTTTTTAAAGAGGTAAATGGGTAAATTTTACATGAC420.11983565396028303No Hit
ACCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.11983565396028303No Hit
TACCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.11983565396028303No Hit
CTTACCGGGCAGGTAGAAGTCAGAGCCATTGTTTGCAGGGAAAGTG420.11983565396028303No Hit
TTACCAGGGAAGTCTCGGAACTTAACCTTGAAAACAAGGAATTGTA420.11983565396028303No Hit
TTCCCAGGGGTTTAAAAATCAGAAACGAAACAAAACAAAACCCCGA420.11983565396028303No Hit
ATTTTCGGGACCTCCATAAGAGTCCCCAAGCTCCATCCACTGTTTG420.11983565396028303No Hit
TAGAATGGGAGTCAAGGCACATCCCAGCCCCGAGCTTCCAGTGTAC420.11983565396028303No Hit
GGCGTGGGGGAATCAGAGTGCGGCTGAGCTGCCGGACAGCCAACCC420.11983565396028303No Hit
ATTACAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG410.11698242410408581No Hit
AACCCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC410.11698242410408581No Hit
ACTATAGGGGGGTCGCATTCGGGACCAGCTTTCTGCTGTAGCTAAT410.11698242410408581No Hit
TTTGGCTGGGATTGGGAAACCTTTGGAGTCTCACTGCTGCATGGAT410.11698242410408581No Hit
TGTCATGGGAAGGCCAAGCTTCTGGGGTTTGGCTCTGCTCTTCTGG410.11698242410408581No Hit
CATCACGGTCAGAAATCGCATTCATGAAATCAACACACAGCTTTCC410.11698242410408581No Hit
TACGCAGGGATTGGGGGTGGGGTGAAAGCCCCCAGAATCAAAACCA410.11698242410408581No Hit
CTTCTGGGAGAGTTCAAATCCCCATGACCCACACGAATGCTGGGTA410.11698242410408581No Hit
GCTTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.11698242410408581No Hit
CGATATGGGGTAACCAGATTCCAACAGTGCTTTGGACCATGGACTG410.11698242410408581No Hit
ATACACGGGGACGGGAACGGCGGCCGCACTAAAGGGGGCCGACATG410.11698242410408581No Hit
GGCTATGGGGGGCTCAGGTACCTGCTGTACAACTTCCCCATGACCT400.11412919424788862No Hit
TATCTGGGGACTACGATATGGTATAATTCTATTCATCGTCTCGGAA400.11412919424788862No Hit
ATTACTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.11412919424788862No Hit
ATATTGGGGACACTTAGTCTTTTTACTTTTGAGTTTTTTGTTTTGT400.11412919424788862No Hit
GCTCTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC400.11412919424788862No Hit
TAATCTGGGATACATAAAACTGAAATAAATGTGCAAAGACTTTGGA400.11412919424788862No Hit
TGCTCAGGACTGAGAGTTTGTAATGGAAGCCCAAGCTAGACTCTCT400.11412919424788862No Hit
ATTTCAGGGAAGACAAGGATCTGCTTGAGAAATAATTTCTCAGAGT400.11412919424788862No Hit
CGCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.11412919424788862No Hit
TGTTGTGGGGGTCTTTTACAGGTCATGTTGGTTGCTGCTGCTTCTG400.11412919424788862No Hit
TGGCCTGGGGATTCATGCTTTCCAGTATGTCATCTATGGAACTGCC400.11412919424788862No Hit
AAAAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.11412919424788862No Hit
ACACCTGGGGTGGCCCCTACCTCTTATGTCTTCTGGAGCAGATGCT400.11412919424788862No Hit
CAAACCGGGACTCCCGGCAGGGACTGAGGACTACATTCATATAAGG400.11412919424788862No Hit
CTTGCAGGGGAATATATTTCAGTGCATCATAATTCTTTATTTTCCC390.11127596439169139No Hit
GAATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.11127596439169139No Hit
CTTTTAGGGACGTGTTTATTAAAATGAAATGAAGACGCAGCAGCCA390.11127596439169139No Hit
AACATGGGGTCTATAGGACTGTGACTAGCTATTCTGAATTTGGGTG390.11127596439169139No Hit
AGCACAGGGTCTTTCTTGGGTGTGATCTAAGGCCACATTCTGGCAG390.11127596439169139No Hit
TTTGCATGGGGATAAGCTAAAATTATCCACAACATATAAATGTAAA390.11127596439169139No Hit
CTTTCTGGGATATGTGTAAATATGGTTTTTATGTCAACTGCACCTA390.11127596439169139No Hit
TCGTGCTGGGGACCTGAAATTGATAGGTGAAACTGATAGGTAGGAC390.11127596439169139No Hit
TTTATGGGGATGGCACTAGCTCATGGCCCTCAATACAGAGTACTCG390.11127596439169139No Hit
ATTTATGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT390.11127596439169139No Hit
ATCTTTGGGGACCGTTTGCTTGTTCGTCTGGGTGCAGCCAGTGCAG390.11127596439169139No Hit
AGCAAAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC380.10842273453549418No Hit
TAGACAGGCCATGTTGCTTGTAATTGACTTCAGGTATGCAGTCTGT380.10842273453549418No Hit
GGACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.10842273453549418No Hit
TGTCTGGGACAAGAGAACATTCAGAGCTGAAGAGAAGGCTCAGCAG380.10842273453549418No Hit
CGCGCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC380.10842273453549418No Hit
TATACCGGGAATCACTATAGCCCTTGGGAAGGCTTGGGCTATTTAC380.10842273453549418No Hit
ATGTAAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC380.10842273453549418No Hit
TGGTCAGGGATATAATAAAGATAATCCATGTTACCATATGGAGTGC380.10842273453549418No Hit
TGCGCAGGGTATCGCGGCCCTAGCAATCGTTCACCTCCTCTTCCTC380.10842273453549418No Hit
GCAGTAGGGGGTGGCCTCGTGCTGTCCCTCTGGCCACTTCTCATGG380.10842273453549418No Hit
AAGTGAGGGGTCCCTGCGTTCCTGCAACTGAGGATGTGAGCGGCAG380.10842273453549418No Hit
GTGCCGGGTCTGGAAGTGGGACTGCAGGAGTTCTCTGGTGGCCTCG380.10842273453549418No Hit
AACGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.10842273453549418No Hit
TATGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.10842273453549418No Hit
TGTTATGGGGTCTCATCACAAACATTCCCACTGGCACCTTCACCAA380.10842273453549418No Hit
AAGTTTGGGGGTTTTGTCTTCTGTTTGATTTTCTGCTCTATCTTTG380.10842273453549418No Hit
CCATTAGGGTCAGTGTTTAGATTCTATGTGGTCAATGATGATTAAT380.10842273453549418No Hit
CTATATGGGGTTTCACGGACTGATGGTCTATATACAGTCAGCTGCA380.10842273453549418No Hit
AGCTCAGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT370.10556950467929696No Hit
CTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT370.10556950467929696No Hit
GTTTAAGGGACAGGCCAGTGGATCAGTACAGCAACCAGAACAACTT370.10556950467929696No Hit
ACTCAAGGGGTGAATGGACAGAGGCAAGCCCTGGCTGTATGGGCGT370.10556950467929696No Hit
AAACTAGGGGAAGAAACAGTGGGTGTCAACAGTTACTACCCAACGC370.10556950467929696No Hit
GTTAAAGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCCT370.10556950467929696No Hit
GTTGTAGGGAAGACAACAATTGAGGAAGATAAGATCGTCTTGAAAA370.10556950467929696No Hit
CAAACTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA370.10556950467929696No Hit
GAACAAGGGAACTTTGCAAAGTAGTAGCCAGCGGGGGGATTTGACC370.10556950467929696No Hit
ATGCTGGGATTCCAGGGCTGCCCAGAGGTCTGTGCGACTTGCCCCT370.10556950467929696No Hit
TGCCTAGGGGATACAACTTTAGCTTTTTTAGTATAAAAGCTCAAGC370.10556950467929696No Hit
GGACTTGGGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTT370.10556950467929696No Hit
TCAACAGGGATCTGCCACTACTGAGGAACATTCTCCGGGAAGGACA370.10556950467929696No Hit
TAAATGGGGGAAGAATTCTGTTTCCTGGAATGAGCATTTCTTATTC370.10556950467929696No Hit
ACATAGGGGATGTGGCACTTTTTCAAGAATAAAGGAAATAGTTTTG370.10556950467929696No Hit
AGCAAGGGGAAATTCCTAAAGTTTATGGAAAGCACAGTAATTTTAC370.10556950467929696No Hit
TAAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC370.10556950467929696No Hit
AAATATGGGGCCCAACACACAGACGTACACACATGGCGTCCATGCA370.10556950467929696No Hit
TTGACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10556950467929696No Hit
TTGCACAGGGGCTATATAGGAATAGTATGAGCAATAATGTCTATTG360.10271627482309974No Hit
TAATTTGGGACCTAAGATGAAAATTTTCTGAACTTTGATTCTCTAT360.10271627482309974No Hit
TTGGAGGGGGAGGACAGGAAAATGGATCCATCGATGCTGTTCCTGT360.10271627482309974No Hit
TCGCATGGGCGGACGCTATGGCGTTCTGCGCTCCCCCGGCCTACCT360.10271627482309974No Hit
AAATCCGGAAATGATGCTACGCAAGAACCAGTTAATTGTACAAACT360.10271627482309974No Hit
GCCTTGGGGATAACATAGTTTGTCACAGCCCTGCTCTTTTGTGACT360.10271627482309974No Hit
ATATCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA360.10271627482309974No Hit
TTATAGGGGGTCAAGGATGAATGCTGCAGACAGAACAAGATGCTGT360.10271627482309974No Hit
GGCAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.10271627482309974No Hit
TGCCGAGGGATTGTGGGCATTAGGAAGCAGACTGATAAATGCTGGT360.10271627482309974No Hit
AGATCAGGGGGGCTGAAGTTTGTGGTCAGGAAGCCCCTTTGTAGCC360.10271627482309974No Hit
TCATTTGGGGGGCACCCAGAAGTTTATATTCTTATCCTCCCAGGAT360.10271627482309974No Hit
GGCAGTGGGGAGGGCTAAAGCTGAGAGATTGAAAAATGCAGACCAC360.10271627482309974No Hit
ATACTAGGGGGAATTGATCAGGACATAGGGTTTGATAGTTAATATT360.10271627482309974No Hit
TTATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.10271627482309974No Hit
TCGAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.10271627482309974No Hit
AGCAATGGGAGAACCGTAAAGAATAAAGATTGAATCAGATTACTAG360.10271627482309974No Hit
AGTGCAGGGCCCACTGAGTTGGTGATTTTTATCCTCCACACAAAGG360.10271627482309974No Hit
GTCAATGGGGGGTGCTGCGGCGCGGATAAGAGCCGCACCGCGCTTG360.10271627482309974No Hit
TGCATCAGGGAAGGCAGGAAGATGGTGGCCGCAAAGAAGACGAAAA360.10271627482309974No Hit
CGTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC360.10271627482309974No Hit
TAGGGTGGGGTTTTAAACACCGTACGGTTTATGCCTATGCCTTTAT360.10271627482309974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)