FastQCFastQC Report
Sat 31 Dec 2022
SRR5842884.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842884.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31101
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTCTGGGAGAGTGAGTTTCAAGGACAGCCAAGGTTACTTATGGA660.2122118259863027No Hit
AATAAGGGATCCAGGCCCTGCTGTACGAGTCCCTGGCCCCACAAGG590.18970451110896758No Hit
CAATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.18970451110896758No Hit
GTAACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA580.18648918041220539No Hit
GCTTTGGGGATTTAAATTAGGGTTGGTATTTATTTCACTGTTTTCC570.18327384971544325No Hit
CGGCATGGGACTTACTTCATGGGTATTTTGCCTGTGTATGTGTGCA560.18005851901868106No Hit
CTGTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.17684318832191892No Hit
GTGTGCGGGACCTTCCTCAGGAAAAACCAGTGTGAGACCAAGATCA550.17684318832191892No Hit
GTTCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.17684318832191892No Hit
ATATCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.17684318832191892No Hit
GCGCTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA550.17684318832191892No Hit
AAGCGGGAATGATACATTATAAAGATTTTACTTTTGGGAGATCGTT540.17362785762515676No Hit
TTATTCGGGGCTGAAGAGGGCGAGTTCGAAGAGGAGGCTGAAGAGG540.17362785762515676No Hit
GGGTTTGGGTACACGACGCTCTTCCCTAGGCTTAGTTGATTCTCTC540.17362785762515676No Hit
TTTGGCGGGACATTTGCAGCGTGCCCTTCTGTCGAGAACCTGCTCC540.17362785762515676No Hit
CCTAAAGGGACCCAGGCATATTCTAAGACAGGCATCATTAATACTC540.17362785762515676No Hit
CATGCCGGGGCCCCACTCACACATAGTCACACTCGCTTAGTGTTGC530.17041252692839456No Hit
GCCTCAGGGTTGACCAGCCCGGAACGAATTAAAAATGGGTGATGTT530.17041252692839456No Hit
GATGCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC530.17041252692839456No Hit
CTGTAAGGGCTTCTAGTGTGGAGACGAATTGCCAGAATTATTAACT520.16719719623163243No Hit
GAACTAGGGATGGACATTCTAATTTGTTTTGTCTGCTGGTAAAACT520.16719719623163243No Hit
GTTCTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA520.16719719623163243No Hit
TAGTATGGGAGTGCTCCCAGAGAGAGCATCCAAGTCCTGAAATTGG510.16398186553487026No Hit
AAGCTTGGGATGTATCACCATCCAACATCAGCAGCCAGCATCTTCT510.16398186553487026No Hit
GTACAAGGGATCCTGAAGCAGTTAGGAACATGGGTGATGTTTGAGC510.16398186553487026No Hit
TAACCAGGGAAGGACTCAGATGAATTCTCTTACACAGCCGCTGACA500.1607665348381081No Hit
ACAGTTGGGATTCATCAGTAGGACTCTCATATCCCAGAAGAGCTCT500.1607665348381081No Hit
ATGCCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA490.15755120414134594No Hit
GCAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.15755120414134594No Hit
GCACCTGGGGACCCACCAAACTCATGCATATCACATAGTTAATCCA480.15433587344458377No Hit
GGCCAGGGGAAGGAACCTACCAAGGCCACCACACTCCTATTGTACA480.15433587344458377No Hit
GTGCCTGGGATCTCAATGAGAGTGTCCTCATTGACAAAGAGACCGC470.1511205427478216No Hit
CGAAATGGGATTGCCACTGAATCTACACAACTGATCAGACTACATA470.1511205427478216No Hit
GAGTATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC470.1511205427478216No Hit
TAGTGGGGGCAAGTCAGAGTATGGAGTGTGATGCACAGGGGAGGTG470.1511205427478216No Hit
GCTATAGGGATTCCCCCTTGGTGCCCTAAGCTCCCAGCACCCCAGC460.14790521205105947No Hit
TCGTAGGGGGAACTGCTCTCCTACCTGGGCCCACCTGACCTCCCCA460.14790521205105947No Hit
TACAATAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.14790521205105947No Hit
CTATCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.14790521205105947No Hit
AACGCAGGGAACAACCACATGCCATTTCCTACCAGGAACCTAACCG460.14790521205105947No Hit
CACACTGGGACCCCACAAGAGAAGAAGCGCAGGAAAGACAGCAGTG460.14790521205105947No Hit
TTGTTAGGGGAGTTAGCGCAGGGAGAGGATGGGAGAAACCCCTGGT450.14468988135429728No Hit
TCTTAAGGGGTTGTAGGTGAACCAAAGTGGCCATGGGTCTGGAGAC450.14468988135429728No Hit
GACTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC450.14468988135429728No Hit
TCACCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.14468988135429728No Hit
ACACCAGGGGGCGGAAGGAATATGGCGTCCGCTACTCGCGTTATCC440.14147455065753514No Hit
CCTTGAGCTCAGAATTAAAATTGCCCTGAATTTTTGAAGATCCAAA440.14147455065753514No Hit
CAACTGGGGTGTTCTGATTCTTTGGGCACCCAGAAGTTTATATTCT440.14147455065753514No Hit
CGCAAAGGGATGCCAATGGTCCCATCAGCTGCGGGATAATGGCAAC440.14147455065753514No Hit
GTAATCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT440.14147455065753514No Hit
AACAATGGGAATCCTCAGAAAGTGGGTAAAGACCACACATTGGAAG430.13825921996077295No Hit
AACACGGGGGGAGGAGAAAGTCAAGACCCTCAAAAGCCAGAACACC430.13825921996077295No Hit
TCTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.13825921996077295No Hit
TTTCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.13825921996077295No Hit
AAACGCGGGACCTGACACCCTGAATCTGGCCACAAAGACTGCTGGT430.13825921996077295No Hit
AAAAAAGGGAGGGGTGGGAATTATATCTTTCCTACTAATTGGATGA430.13825921996077295No Hit
ACGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.13825921996077295No Hit
GCCAAGGGATCTCAAAAGGAGAACAGCATTTTTGAGGATGGCAGCT430.13825921996077295No Hit
ATGAAGGGGGCTCTGCACCCTTCCCTGAAGTGAGCATCCCCTGTTT430.13825921996077295No Hit
ACTAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.13825921996077295No Hit
AGCTAAGGGATAAAGAAAAATACTTAATTGGGGCTGGCCTACAGGT420.1350438892640108No Hit
AATATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA420.1350438892640108No Hit
CAGATAGGGGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCT420.1350438892640108No Hit
TGCTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA420.1350438892640108No Hit
GAAGCAGGGGTTCTGCTTGGATTTTTATCTCCTTTGCAATGGTAGA420.1350438892640108No Hit
AAACAGGATCAAACAACCCAACAGGATTAAACTCAGATGCAGATAA420.1350438892640108No Hit
CGGGAAGCGGGAAGAGCATCAGGGAGAAGTGAGCCCCCACAACCCA410.13182855856724865No Hit
GTGACTGGGGAACTGAGCCTGCCTAAATGCCTAGGTAGCTTGTCTA410.13182855856724865No Hit
CGTCATGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT410.13182855856724865No Hit
TTCTAAGGGCTTCGTAGGGGATGCCACAACTAGATACATCAACATG410.13182855856724865No Hit
TGTCGAGGGGCATACTGAGGACTTGAGACTCTGAGACTATGCTGTG410.13182855856724865No Hit
TAATCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.13182855856724865No Hit
TACTCAGGGGACTTTCTCCCTTCCTCAAACAGAGGCCTGGGCTAGC410.13182855856724865No Hit
TCTCCGGGGACTGCCGAGGAGAACCACCCCTTTTGTGTGAAGTTGC400.12861322787048649No Hit
ACGTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.12861322787048649No Hit
TGTGTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC400.12861322787048649No Hit
GTAGCTGGGGGTTGATTAACTAAGATTCTCTTTCCAAATTAACCTG400.12861322787048649No Hit
CAGCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.12861322787048649No Hit
ACAATGGGGTATGCCACAACTAGATACATCAACATGATTTATCACA400.12861322787048649No Hit
TGCCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.12861322787048649No Hit
AACCGGAATTGTTTTATCCAACTCATCCCTTGACATCGTGCTTCAC400.12861322787048649No Hit
TACAAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.12861322787048649No Hit
TAATGCGGGAGCCACGGTTGTACCTTGTGCTGTGGATGGACTTGGT400.12861322787048649No Hit
TACACTGGGGTGCAGCTGTGAAGGTTCCTCCATATCAGCTCGTGGG400.12861322787048649No Hit
AAGTTAGGGATGGTTGGCTTGGATGCGGCTGGCAAGACTACCATCC400.12861322787048649No Hit
GCTAACGGGGAGATGCGAGGTGGAAAAGTCACACTAGAGCGACACC400.12861322787048649No Hit
CGTTGGGGGGTGGGGAGGCTGGACATGTATGTCCTCAACCCTGTCA390.12539789717372432No Hit
ATGCTTGGGGATCTTGTCGCGGGAATGCAGTCACGGTCCTTTTTAA390.12539789717372432No Hit
GATTCTGGGGCATCTTTATAACTTAGTTCTTAACTTTTTTTAATTT390.12539789717372432No Hit
ATCACGGGGACAGAAGGCGGCTGCTTGGTGCTAACATCCGAGTCCG390.12539789717372432No Hit
GGTCCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.12539789717372432No Hit
TCTGCAGGGATTGGGGGTGGGGTGAAAACCCCCAGAATCAAAACCA390.12539789717372432No Hit
AAAGCAGGGGACCGCATCCAGAGCGTGCTCTCAGGTAAGGGACACG390.12539789717372432No Hit
GTTGCTGGGATCCCAGACTTCACGGCCTTTACCACCGTGGATGACT380.12218256647696214No Hit
TCTAGCAGGGACCTCTCTCTGGGCTTCTTTTTTGATCGGGATGACG380.12218256647696214No Hit
TTGCCAGGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCA380.12218256647696214No Hit
TATTAAGGGATTTCCCAATTGTTTATCTCTTGTTTGGAGTTGTATC380.12218256647696214No Hit
TTTGTTGGGACCCTCGGGAGTACCAGTATGGCGACGACCAGGGCAT380.12218256647696214No Hit
TTAGGTGGGGGGAAAACCCTGGGTTTAATTCCCCTTTCTGGTTTTT380.12218256647696214No Hit
ATTGTTGGGATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGT380.12218256647696214No Hit
TTGGTAGGGGTCCTGACCTCTTGTCTCTAGACCTCCATTCTTATTT370.11896723578019999No Hit
ATCAACGGGGCATGTGGTACTGGCGGCCTGTGCCCTCCTCTGTATC370.11896723578019999No Hit
ATTTTGGGGGCCAAAGTGTGACGCTCCCAGCTCCACATGCAGGAGA370.11896723578019999No Hit
CGCCTTGGGCTGCAAGTATGGCGGCGTCGAAGGTGAAGCAGGACAT370.11896723578019999No Hit
CTCGCAGGGAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTT370.11896723578019999No Hit
GCATGGGGAAAAGGAGAAGTTTGCAGGAGGAGACTACACAACCACA370.11896723578019999No Hit
CCAACAGGGCGGCTGATCGTGGTTTTACTAGGCTAGACTAGCGTAC370.11896723578019999No Hit
GGTATGGGACCCAGAGGCCATCTTTGAGATCAGCTACTTCAAGAAA370.11896723578019999No Hit
AGCCCAGGGATCTGCACTGCCAAGACTGAATGGCTGGATGGCAAGC370.11896723578019999No Hit
TGTTACGGGAGCCAGGAGGTGGCAAGGTGCAGATAATTAATAAGAA370.11896723578019999No Hit
CGCATGGGGAATCTTTCTGTATGTGGTGTCTAACATCTACAAGGTG370.11896723578019999No Hit
GAGCAAGGGGCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGAT360.11575190508343783No Hit
CTAAATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA360.11575190508343783No Hit
TAGTACGGGAACCCTGCCCGAGTGGTTCCCAGCAGGCCATCATTTC360.11575190508343783No Hit
TTTTTCGGGGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCC360.11575190508343783No Hit
AACTGTGGGACTTCTCACTCACTCCCGTAACTTCACATCCATGTCC360.11575190508343783No Hit
TCCTTAGGGGTCATTGCCAAGCCGGATGTCTTCAAGAGCCCCGCCT360.11575190508343783No Hit
TGTTATGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG360.11575190508343783No Hit
CTCTCAGGGACAAGAGCATCCCGAGGACCAGGAGAAGGTGGAGCTG360.11575190508343783No Hit
TAGCAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG360.11575190508343783No Hit
ATAAACGGGATGTGGATACAGAGAGCAAGTTCCGGAAACTGGTGAC360.11575190508343783No Hit
AGCCCTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG350.11253657438667568No Hit
ATAACGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA350.11253657438667568No Hit
TATACGGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT350.11253657438667568No Hit
GCTCAACGGGACATTTGCATATGGGAGAGCTAGTGGTGTGCTGGGT350.11253657438667568No Hit
AATTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA350.11253657438667568No Hit
GCTTATGGGATGTCTTGTTATTTTGACCGAGATGATGTGGCTCTGA350.11253657438667568No Hit
TCTACGGGATGGCCACGGAAGTAGCCGCTGATGCTCTTGGTGAAGA350.11253657438667568No Hit
CTCCCTGGCCAAGTGACACCACCTGAGCAGATCTTCCACCTGGTGC350.11253657438667568No Hit
AAACCTGGGATGGAGAAGACCACTTATAGAAGAAAAAAATTTATTT350.11253657438667568No Hit
GCACACGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA350.11253657438667568No Hit
TATTGTGGGGTTTGAGCATTTTACCTGCATGTATATATGTGTACCA350.11253657438667568No Hit
CCGCATGGGGTCCACACAAACATCATCATCATCATCACCACCACCA350.11253657438667568No Hit
TAAGTGGGGGCAGCATACTTTAGGTGGGCCTTGGCTTCCTTCCGCA350.11253657438667568No Hit
ACACGCCTCTGTTCCCACCCTTTTCAGTCTCCTCAACCCCACCTTC350.11253657438667568No Hit
AGATCCGGGGTTTCAAATGACAGTAAGCTACAAATCATGACGCTAA350.11253657438667568No Hit
ACTTGCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG340.1093212436899135No Hit
CTTCTCGGGGCCTTTTCAGCGGCGCGCGGCTGCAAGATGGCGGTGC340.1093212436899135No Hit
CCTTCAGGGATCCACCCAACCTTCCTGCCGCCTATGGGCCAACCCC340.1093212436899135No Hit
TCTTGTGGGGGCAGAGGCTCTGGGAGACCAGAGACTCACCCTACAC340.1093212436899135No Hit
ACACGGCAACATACTCACCCCCTTACTGCAGCAAGATTGTCATCAG340.1093212436899135No Hit
GGTACTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAAT340.1093212436899135No Hit
CTTCACGGGTGGCCAGGACACCTGAGCCCACATCTTTGGAGACCAA340.1093212436899135No Hit
GACTATGGGGGTAGCCTGTCTCTTGCTGCTTCACATCTGTATTTGA340.1093212436899135No Hit
TCCTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA340.1093212436899135No Hit
CTTTCTGGGAGTGCAATAACAATTGTTAAATATCTAAAAGGTGTGC330.10610591299315135No Hit
TCTTGCCGGGAAAGTTCAAGTTCAGGAAAACACGGAAGAAATGCCA330.10610591299315135No Hit
TAAAGCGGGGGAGTGATATCTTCCGGTATAGCAGCATGGAAGACCA330.10610591299315135No Hit
GTCCGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.10610591299315135No Hit
TCCAGCGGGGAGCAGCCACATCTTGCAGGGACAGCATCGTGCTGGA330.10610591299315135No Hit
AGCCTTGGGGTAATGTCAGTTAAGACAACTTTTGAAGTTCCATGTT330.10610591299315135No Hit
TTCTCAGGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGT330.10610591299315135No Hit
TTCCTAGGGGCCTTTTATTGGGTGATGTTAATTCTCGAATGTAGTA330.10610591299315135No Hit
ACTTATGGGAGACAATTACTCTCCCAACTTAGCTCCTGGTTAACTT330.10610591299315135No Hit
TTAGTTGGGGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACT330.10610591299315135No Hit
TTTCCGGGGGGAGAGTTAATCAGTTGGTCACTGCACTCCTGAGCAC330.10610591299315135No Hit
CTTAATGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC330.10610591299315135No Hit
AGTGCTAGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA330.10610591299315135No Hit
TCGCCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.10610591299315135No Hit
ATAAAGGGGATGGAGCACTCACTTGAGAGAGAGCAAAGGGGATCAA330.10610591299315135No Hit
GTACTGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT320.10289058229638919No Hit
AGCCATGGGAGACTCAACCTGTTCCTCTTTGGCAAGCTTTTAAACC320.10289058229638919No Hit
CATCACGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC320.10289058229638919No Hit
CAAATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA320.10289058229638919No Hit
CATCGCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG320.10289058229638919No Hit
TGCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA320.10289058229638919No Hit
GCACATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC320.10289058229638919No Hit
GTTGGGAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGC320.10289058229638919No Hit
CTAACCGGAATTGTTTTATCCAACTCATCCCTTGACATCGTGCTTC320.10289058229638919No Hit
ACCTAAGGGGATTCCGCTTCCCGTCTGACATTGGCGTCTTTGCTAA320.10289058229638919No Hit
AACGCAGGGATCTTTAAAAAACTAAAACAACCCAGAGCACAGTGTG320.10289058229638919No Hit
TCTGTAGGGATGCAGGCAGCACGGAGGACTAGTTAATCTATTGCTT320.10289058229638919No Hit
TACCTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG320.10289058229638919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)