FastQCFastQC Report
Sat 31 Dec 2022
SRR5842883.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842883.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29432
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTTGGGGATTTAAATTAGGGTTGGTATTTATTTCACTGTTTTCC580.19706441967926067No Hit
AGCTAAGGGATAAAGAAAAATACTTAATTGGGGCTGGCCTACAGGT560.19026909486273444No Hit
AACACGGGGGGAGGAGAAAGTCAAGACCCTCAAAAGCCAGAACACC560.19026909486273444No Hit
GAACTAGGGATGGACATTCTAATTTGTTTTGTCTGCTGGTAAAACT560.19026909486273444No Hit
CGCAAAGGGATGCCAATGGTCCCATCAGCTGCGGGATAATGGCAAC560.19026909486273444No Hit
AATAAGGGATCCAGGCCCTGCTGTACGAGTCCCTGGCCCCACAAGG560.19026909486273444No Hit
TCTCCGGGGACTGCCGAGGAGAACCACCCCTTTTGTGTGAAGTTGC550.18687143245447133No Hit
ACGTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.18687143245447133No Hit
TCTGCAGGGATTGGGGGTGGGGTGAAAACCCCCAGAATCAAAACCA550.18687143245447133No Hit
GTGTGCGGGACCTTCCTCAGGAAAAACCAGTGTGAGACCAAGATCA540.1834737700462082No Hit
GTAACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA540.1834737700462082No Hit
ACAGTTGGGATTCATCAGTAGGACTCTCATATCCCAGAAGAGCTCT530.18007610763794507No Hit
GATGCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC530.18007610763794507No Hit
TGTTACGGGAGCCAGGAGGTGGCAAGGTGCAGATAATTAATAAGAA530.18007610763794507No Hit
ATGAAGGGGGCTCTGCACCCTTCCCTGAAGTGAGCATCCCCTGTTT530.18007610763794507No Hit
TTTGGCGGGACATTTGCAGCGTGCCCTTCTGTCGAGAACCTGCTCC520.17667844522968199No Hit
AACGCAGGGAACAACCACATGCCATTTCCTACCAGGAACCTAACCG520.17667844522968199No Hit
ATATCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.17667844522968199No Hit
GCAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.17667844522968199No Hit
TACACTGGGGTGCAGCTGTGAAGGTTCCTCCATATCAGCTCGTGGG510.17328078282141887No Hit
CAATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.16988312041315573No Hit
TCCTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.16648545800489264No Hit
GCTTATGGGATGTCTTGTTATTTTGACCGAGATGATGTGGCTCTGA480.16308779559662953No Hit
GGGTTTGGGTACACGACGCTCTTCCCTAGGCTTAGTTGATTCTCTC480.16308779559662953No Hit
CTCCCTGGCCAAGTGACACCACCTGAGCAGATCTTCCACCTGGTGC470.1596901331883664No Hit
TACAAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA470.1596901331883664No Hit
AAGCGGGAATGATACATTATAAAGATTTTACTTTTGGGAGATCGTT460.15629247078010328No Hit
CATGCCGGGGCCCCACTCACACATAGTCACACTCGCTTAGTGTTGC460.15629247078010328No Hit
TCTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.15629247078010328No Hit
CTTCTCGGGGCCTTTTCAGCGGCGCGCGGCTGCAAGATGGCGGTGC460.15629247078010328No Hit
CTATCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.15629247078010328No Hit
GAGTATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC460.15629247078010328No Hit
CCTAAAGGGACCCAGGCATATTCTAAGACAGGCATCATTAATACTC460.15629247078010328No Hit
ACTAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.15629247078010328No Hit
GCTATAGGGATTCCCCCTTGGTGCCCTAAGCTCCCAGCACCCCAGC450.1528948083718402No Hit
TTCGGTGGGGTATAAACAAGGTCTCTCTATTTCACTCTGACCATCC450.1528948083718402No Hit
AACAATGGGAATCCTCAGAAAGTGGGTAAAGACCACACATTGGAAG450.1528948083718402No Hit
CCTTGAGCTCAGAATTAAAATTGCCCTGAATTTTTGAAGATCCAAA450.1528948083718402No Hit
TTATTCGGGGCTGAAGAGGGCGAGTTCGAAGAGGAGGCTGAAGAGG450.1528948083718402No Hit
CAGCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.1528948083718402No Hit
GCAATCGGGACGACTTCTGTACTCACTCTTTCTGTCATAGTTGGCC450.1528948083718402No Hit
GTGCCTGGGATCTCAATGAGAGTGTCCTCATTGACAAAGAGACCGC440.14949714596357705No Hit
CTGTAAGGGCTTCTAGTGTGGAGACGAATTGCCAGAATTATTAACT440.14949714596357705No Hit
TGCCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.14949714596357705No Hit
TGCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.14609948355531394No Hit
CTTTCGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA430.14609948355531394No Hit
AACCCTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG430.14609948355531394No Hit
CGGCATGGGACTTACTTCATGGGTATTTTGCCTGTGTATGTGTGCA430.14609948355531394No Hit
TTTGTTGGGACCCTCGGGAGTACCAGTATGGCGACGACCAGGGCAT430.14609948355531394No Hit
GACTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC430.14609948355531394No Hit
TAATGCGGGAGCCACGGTTGTACCTTGTGCTGTGGATGGACTTGGT430.14609948355531394No Hit
ATGCTTGGGGATCTTGTCGCGGGAATGCAGTCACGGTCCTTTTTAA420.14270182114705085No Hit
TCGTAGGGGGAACTGCTCTCCTACCTGGGCCCACCTGACCTCCCCA420.14270182114705085No Hit
AAAGCAGGGGACCGCATCCAGAGCGTGCTCTCAGGTAAGGGACACG420.14270182114705085No Hit
AAGTTAGGGATGGTTGGCTTGGATGCGGCTGGCAAGACTACCATCC420.14270182114705085No Hit
TAGTATGGGAGTGCTCCCAGAGAGAGCATCCAAGTCCTGAAATTGG410.1393041587387877No Hit
TTTCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.1393041587387877No Hit
TTTTATGGGGCCTCAAACTCCAAATACTCACTATTCGGAGCTTTAC410.1393041587387877No Hit
GTAATCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT410.1393041587387877No Hit
ACGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.1393041587387877No Hit
AACGCAGGGATCTTTAAAAAACTAAAACAACCCAGAGCACAGTGTG410.1393041587387877No Hit
ATAAAGGGGATGGAGCACTCACTTGAGAGAGAGCAAAGGGGATCAA410.1393041587387877No Hit
AGCCCTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG400.1359064963305246No Hit
TGCACGGGGGCAGAGGGAAGGAAAGGGGCGAGTGGGCTGGGCAATG400.1359064963305246No Hit
AATATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.1359064963305246No Hit
TGTGTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC400.1359064963305246No Hit
ATAATGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA400.1359064963305246No Hit
GCCAAGGGATCTCAAAAGGAGAACAGCATTTTTGAGGATGGCAGCT400.1359064963305246No Hit
TAGCACGGGACTATAAGATCTTTCTGATAACGCAGAGATTTTTTGT400.1359064963305246No Hit
TACAAAGGGAATCTCCAAATCTGTATTTCAATTTTGCATTTATATG390.13250883392226148No Hit
GCATGGGGAAAAGGAGAAGTTTGCAGGAGGAGACTACACAACCACA390.13250883392226148No Hit
AAAAAAGGGAGGGGTGGGAATTATATCTTTCCTACTAATTGGATGA390.13250883392226148No Hit
CCCCTATCAATTTTAATTCAAATTTACCCGCTACTCAACTCTACTA390.13250883392226148No Hit
GCGCTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA390.13250883392226148No Hit
AAGCTTGGGATGTATCACCATCCAACATCAGCAGCCAGCATCTTCT380.12911117151399837No Hit
CTATCCGGGTCAGGTCTAGTAATATGATTTCACTATAATTCAATTA380.12911117151399837No Hit
TTGTTAGGGGAGTTAGCGCAGGGAGAGGATGGGAGAAACCCCTGGT380.12911117151399837No Hit
CGCCTTGGGCTGCAAGTATGGCGGCGTCGAAGGTGAAGCAGGACAT380.12911117151399837No Hit
TTAGCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC380.12911117151399837No Hit
GCACCTGGGGACCCACCAAACTCATGCATATCACATAGTTAATCCA380.12911117151399837No Hit
AAACGCGGGACCTGACACCCTGAATCTGGCCACAAAGACTGCTGGT380.12911117151399837No Hit
ATGCCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA380.12911117151399837No Hit
TGCTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA380.12911117151399837No Hit
TGTTATGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG380.12911117151399837No Hit
AAACAGGATCAAACAACCCAACAGGATTAAACTCAGATGCAGATAA380.12911117151399837No Hit
TACTCAGGGGACTTTCTCCCTTCCTCAAACAGAGGCCTGGGCTAGC380.12911117151399837No Hit
TTGCCAGGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCA370.12571350910573525No Hit
CTGTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.12571350910573525No Hit
TCACGAAGGGAAAGAACATCAGACTTCTCCCTACCACCCCCGACGG370.12571350910573525No Hit
TCCAGCGGGGAGCAGCCACATCTTGCAGGGACAGCATCGTGCTGGA370.12571350910573525No Hit
TCTACGGGATGGCCACGGAAGTAGCCGCTGATGCTCTTGGTGAAGA370.12571350910573525No Hit
ATCACGGGGACAGAAGGCGGCTGCTTGGTGCTAACATCCGAGTCCG370.12571350910573525No Hit
TACAATAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.12571350910573525No Hit
GGTACTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAAT370.12571350910573525No Hit
GTTCTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA370.12571350910573525No Hit
ATAAACGGGATGTGGATACAGAGAGCAAGTTCCGGAAACTGGTGAC370.12571350910573525No Hit
ATTAACGGGAGAAAAGGCCCTGCAGACCACCTATGGCACCAACGCC370.12571350910573525No Hit
TGTTCCGGGGGATGATCTAGAAAAATATTTAAGCTTTAAGCATTAA360.12231584669747216No Hit
TCTAGCAGGGACCTCTCTCTGGGCTTCTTTTTTGATCGGGATGACG360.12231584669747216No Hit
TGCTGTAGTTTTGTTTGAAACGGCAACACTTCGGTCAGGATATCTT360.12231584669747216No Hit
GAAGCAGGGGTTCTGCTTGGATTTTTATCTCCTTTGCAATGGTAGA360.12231584669747216No Hit
CGGGAAGCGGGAAGAGCATCAGGGAGAAGTGAGCCCCCACAACCCA350.11891818428920901No Hit
TCTCGGGGTGGACAGAACTAGTTATCTTTCCTTTAGAGTTTCTGGA350.11891818428920901No Hit
TCTTGTGGGGGCAGAGGCTCTGGGAGACCAGAGACTCACCCTACAC350.11891818428920901No Hit
GGCCAGGGGAAGGAACCTACCAAGGCCACCACACTCCTATTGTACA350.11891818428920901No Hit
GTAACTGGGGCCCTTAGATTTCTACACGAGAACCAGCTGACCCACA350.11891818428920901No Hit
TCAGGAGGGATTCCCAACTTCAAGAGCACAGAGGATAGGCTCAACT350.11891818428920901No Hit
CTACGAGGGATCCCTCATAGTACCAAACGATTCCCTGGTTATGACT350.11891818428920901No Hit
GAGCAAGGGGCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGAT340.11552052188094591No Hit
TAACCAGGGAAGGACTCAGATGAATTCTCTTACACAGCCGCTGACA340.11552052188094591No Hit
ATAACGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.11552052188094591No Hit
CGTTGGGGGGTGGGGAGGCTGGACATGTATGTCCTCAACCCTGTCA340.11552052188094591No Hit
TAGTACGGGAACCCTGCCCGAGTGGTTCCCAGCAGGCCATCATTTC340.11552052188094591No Hit
GATTCTGGGGCATCTTTATAACTTAGTTCTTAACTTTTTTTAATTT340.11552052188094591No Hit
CCTTCAGGGATCCACCCAACCTTCCTGCCGCCTATGGGCCAACCCC340.11552052188094591No Hit
AATTCTGGGAGAGTGAGTTTCAAGGACAGCCAAGGTTACTTATGGA340.11552052188094591No Hit
TGTCGAGGGGCATACTGAGGACTTGAGACTCTGAGACTATGCTGTG340.11552052188094591No Hit
TCACATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.11552052188094591No Hit
TTTTCAGGGGTCCTGCTTGTGTAGAAGGTATTTCTTCAGTGGTGTT340.11552052188094591No Hit
TAAACGGGGATACTCAAGAACACTATCACTTTGCCCTAAACTGCCT340.11552052188094591No Hit
CCAACAGGGCGGCTGATCGTGGTTTTACTAGGCTAGACTAGCGTAC340.11552052188094591No Hit
TATTGTGGGGTTTGAGCATTTTACCTGCATGTATATATGTGTACCA340.11552052188094591No Hit
ATTGTTGGGATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGT340.11552052188094591No Hit
ACACGCCTCTGTTCCCACCCTTTTCAGTCTCCTCAACCCCACCTTC340.11552052188094591No Hit
ATCCATGGACGATGGTGTCTCCTTGGCTCCTCAAGCTCAGATGGAC330.11212285947268279No Hit
GTTGCTGGGATCCCAGACTTCACGGCCTTTACCACCGTGGATGACT330.11212285947268279No Hit
CTCTATGGGGAATTGATCAGGACATAGGGTTTGATAGTTAATATTA330.11212285947268279No Hit
GGTCCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.11212285947268279No Hit
ACTTATGGGAGACAATTACTCTCCCAACTTAGCTCCTGGTTAACTT330.11212285947268279No Hit
TCCTTAGGGGTCATTGCCAAGCCGGATGTCTTCAAGAGCCCCGCCT330.11212285947268279No Hit
GTCCAAGGGATCATCGTGCTTAACAGTACCATTCATGAATACTGCC330.11212285947268279No Hit
CTTCACGGGTGGCCAGGACACCTGAGCCCACATCTTTGGAGACCAA330.11212285947268279No Hit
GACTATGGGGGTAGCCTGTCTCTTGCTGCTTCACATCTGTATTTGA330.11212285947268279No Hit
GCTAACGGGGAGATGCGAGGTGGAAAAGTCACACTAGAGCGACACC330.11212285947268279No Hit
AGCCATGGGAGACTCAACCTGTTCCTCTTTGGCAAGCTTTTAAACC320.10872519706441967No Hit
ACTTGCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG320.10872519706441967No Hit
TTGGTAGGGGTCCTGACCTCTTGTCTCTAGACCTCCATTCTTATTT320.10872519706441967No Hit
GCATCTGGGCCCTTTCCTGTTCGGCGCGTGCGGTTGAGTCGGGGAT320.10872519706441967No Hit
GCAACTGGGGATCTTGAAGGACCCTGAAATCTAAAATGGGTGTCAA320.10872519706441967No Hit
ACCAACGGGGTCTTCACACCTGCCGCTTGCATGGAAGGTGCTTTAG320.10872519706441967No Hit
TCATCTGGGAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGA320.10872519706441967No Hit
ACACCAGGGGGCGGAAGGAATATGGCGTCCGCTACTCGCGTTATCC320.10872519706441967No Hit
CCACCTCCTGAGTGCTGGGGTTACAGGTGATCGCTGGTCTCCTGCC320.10872519706441967No Hit
AATTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA320.10872519706441967No Hit
CGAAATGGGATTGCCACTGAATCTACACAACTGATCAGACTACATA320.10872519706441967No Hit
ATCACCGGGACAGAAGTGGATGCTCACAGCCAACCACTGGACGGAG320.10872519706441967No Hit
AGTCCAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT320.10872519706441967No Hit
CAACTGGGGTGTTCTGATTCTTTGGGCACCCAGAAGTTTATATTCT320.10872519706441967No Hit
TTAGGTGGGGGGAAAACCCTGGGTTTAATTCCCCTTTCTGGTTTTT320.10872519706441967No Hit
TTAGTTGGGGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACT320.10872519706441967No Hit
TAATCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA320.10872519706441967No Hit
TCTGTAGGGATGCAGGCAGCACGGAGGACTAGTTAATCTATTGCTT320.10872519706441967No Hit
CTGCCTGGGAATAGTAATAAACTTGTGTTCCTACCACTAAAATGGG320.10872519706441967No Hit
GCCTCAGGGTTGACCAGCCCGGAACGAATTAAAAATGGGTGATGTT310.10532753465615657No Hit
GTAGCTGGGGGTTGATTAACTAAGATTCTCTTTCCAAATTAACCTG310.10532753465615657No Hit
AAGACTGGGATTCTGGTGCCTGGGGCTTAGAGCCCTGTCTTCAGCA310.10532753465615657No Hit
CTTGAAGGGAATCCAGAGGAGGTCCAAATCCCGGGCACCAAGCGAA310.10532753465615657No Hit
ACACGGCAACATACTCACCCCCTTACTGCAGCAAGATTGTCATCAG310.10532753465615657No Hit
TGCTTCGGGAACTCTGCTATACCAGGCAGCCAGGTATCTAGCAATG310.10532753465615657No Hit
TCACCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA310.10532753465615657No Hit
GGTATGGGACCCAGAGGCCATCTTTGAGATCAGCTACTTCAAGAAA310.10532753465615657No Hit
CTTAATGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC310.10532753465615657No Hit
GATTCTGGGATGCCATTGCCTTAATTGTCATTGCCCTGGGCACGAG310.10532753465615657No Hit
TTTCACGGGGGGAGCTCTCAGAGATTAAACCTCCAACTGGGGAGCC310.10532753465615657No Hit
TCATGTGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA300.10192987224789343No Hit
ATGTAAGGGGAAGCAGGAAGTGAAGCTGTGGCTGCCTTGGGTGGAA300.10192987224789343No Hit
CTAAATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA300.10192987224789343No Hit
TTTCAGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAG300.10192987224789343No Hit
AACCGGAATTGTTTTATCCAACTCATCCCTTGACATCGTGCTTCAC300.10192987224789343No Hit
AGATGAGGGATAACATTTGGCGAAATGTTTAGAAGATTCCAGGGTT300.10192987224789343No Hit
ATACTAGGGGTATCAAATCAGAGTGTCATGTGAGCTCTCACATTGA300.10192987224789343No Hit
TATAATGGGGGCAAACACAGAGTTTTAAAATCTTCTGTGTTAAAAA300.10192987224789343No Hit
GTATTGGGGAATGATACTGAAGCTACGAATATACTGACTATGAAGA300.10192987224789343No Hit
GTCTCCGGGGCAAAACAGCTGAGGTAAGTGAATGAGAAGAGTGCTT300.10192987224789343No Hit
CACACTGGGACCCCACAAGAGAAGAAGCGCAGGAAAGACAGCAGTG300.10192987224789343No Hit
AGGTAAGGGGCAGAGAGAACAGCCAGGGAGAGAAAGAGCTATAAGC300.10192987224789343No Hit
CTAATAGGGGTCTGCCAACATCGTGGCCTTTGATGCCGTCCTGCTT300.10192987224789343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)