FastQCFastQC Report
Sat 31 Dec 2022
SRR5842880.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842880.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40922
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTTGGGAGACATGCCCAGACTGTCCATAGAGCATCACTTATAA610.14906407311470604No Hit
ACAATAGGGGAATCCTTGTAACCCTTTCAAATAGTGTTATTTCCTA550.13440203313621035No Hit
GTTGTTGGGGGATGAGTTCTGGGGATGAAACTCAGCTTCTTATGTT520.1270710131469625No Hit
AAAGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.1270710131469625No Hit
CGCTCTGGGGTGTCTCAGCACTGCTGCTTCTGCACTGACAGGAATC500.12218366648746395No Hit
CAGACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.12218366648746395No Hit
ATGCAGGGGCTGGCATTTATGTCGAACAATTCACAATGTCTGCAGT500.12218366648746395No Hit
TTTAGCGGGCCGGGCCATTGCTGTTTTCCCCAGAAAGGGGTAAGTT490.11973999315771468No Hit
TAGACTGGGAATACAAGTGTACTACAAAATATCATTATGTTAAAAA490.11973999315771468No Hit
AGTAACGGGTGGGAGTTGCCTTTCTCCTTCCACCAGGGAGGTTCCA480.1172963198279654No Hit
AAACTGGGGGGCGCAGTGGTGTACACAGTCACATGACCAACACGCG480.1172963198279654No Hit
GATACCGGGCGATCTTTGAACGGGATCCATGGTTCCCCATCCACAG470.11485264649821612No Hit
TTCAGGGGGGTTCTGTGGAGTCTGCGTGGGCATCGTGGGCAGTGGG470.11485264649821612No Hit
AAAACTGGGGTGCACCCCCAAGGTGGACTCTCCCCAGGACCAGCTG470.11485264649821612No Hit
ACACCAGGGACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGA470.11485264649821612No Hit
AAACTAGGGATATCAAGTTCTTTTTATTTTCAGAATATAATTTTGA470.11485264649821612No Hit
TAGCTGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT460.11240897316846683No Hit
ACACTTGGGATGGAAGAGACAGAGAGGTCCCTACATGATGCCATCA460.11240897316846683No Hit
GCTTGTGGGAAACTATTTACTAGTCTCCAAACCATGCTGTGGGAAC460.11240897316846683No Hit
GCACTCGGGATCACACCATCCTGGGCCTCAGGCTGCCTGGGAGGGG460.11240897316846683No Hit
CTTTCAGGGATTTCTCTGTATACCTGAACATGACAGCGTGCACATA450.10996529983871757No Hit
CTAGTCGGGATGGTGGAGAAATGAAGCCCTTGGTGTCCAGCATGCA450.10996529983871757No Hit
CCATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.10996529983871757No Hit
ACTTCTGGGCCCAATAGGTACCACTAACGTCCGTGTGATTTTAACC450.10996529983871757No Hit
TTCCAGGGGGTTACTAGATAAATAGCCATGGTGGGTGTTAGACCAG450.10996529983871757No Hit
CAGATGGGGGGAGGAGAGGGGCGTTGCAGTAGAGAAGGCTCTTCGA440.10752162650896828No Hit
TTGCCTGGGGTTCCCTTTGACTTCCCGAGTTGGAGTACAAGAATGT440.10752162650896828No Hit
TAACCTGGGGGGGTTGCGGTAGAACATGGCGCAGGGACAACGCAAG440.10752162650896828No Hit
GACTGAGGGGTGGTGGAGGCTGAGGCAGGAAGGAACACCACTATTC440.10752162650896828No Hit
CTTCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.10752162650896828No Hit
TTCCACGGGGATTACCTGGAACGTGCTCTTCTCCCCGCGCTGGCTG440.10752162650896828No Hit
TATGGGGCAAGGAGGTGGGAAGGGCTTTGTTGGAAAATACCAAAAA430.105077953179219No Hit
TTTCTCGGGAAGTTCTTTTTGTATTTTATGCAGAAGAAGAGTGTGT430.105077953179219No Hit
TACGTTGGGGATTATTAATAAATACACTGTGAGATTAGTTTAGTTG430.105077953179219No Hit
AAACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.105077953179219No Hit
TTCACAGGGAGACAGACATGGATATGAGATGGCACTGTGAAAACTC430.105077953179219No Hit
CCAGCCCCCAGCAAACAGTTTCTAAGAGCTTTTCTATATCAGATAT430.105077953179219No Hit
TATTTTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC430.105077953179219No Hit
TATACCGGGGATCTACGCAACCGACTCGGGCAGTACCGCAACGAGG420.10263427984946973No Hit
AATGTAGGGGAATATTTTCAAAACAGTAGTTGACCAAATTGTTCTT420.10263427984946973No Hit
CCTTCAGGGGTGCTGGGATTACAGGCATGAGCCACCATGCCGGGCC420.10263427984946973No Hit
GACACAGGGATGTCAGCAGTTACTGTGTAAATATGAAGCAAAGATT420.10263427984946973No Hit
AATGACGGGACACCCGGACAGAAATATAATGTCTGGATCTACTTCA420.10263427984946973No Hit
CTGCACGGGGAGGTGGATGCCCAGGAAGGCGACAACATGGGGCGTG420.10263427984946973No Hit
ACTGTTGGGATGTGTACACTGTAGCTGTCTTCAGACACGCCAGAAG420.10263427984946973No Hit
TTCTCGGGGGTATATGAGGAGCAAGGAAGCAGCAAGGTCTTCCAGG420.10263427984946973No Hit
TTGGCTGGGCTCCAAGGAAAGCTCTAGCAGTCTCCAGGGGCTGAAG420.10263427984946973No Hit
AATTAAGGGGCCTGATACAAACCAATGGGCAGGAATGACGAAGCCA420.10263427984946973No Hit
AATAATGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC420.10263427984946973No Hit
GTGGCTGGGGTTATCAGCTATCTGCTTAGAGGTCTCTCTGGGGGTG410.10019060651972045No Hit
TTATGCGGGGGACACTTATCTGCAGTTCACTGACCTGCAGAACTGG410.10019060651972045No Hit
ATACAAGGGCCTTTGGAAATGTTGCTGTTGTTGTTACTATGCTCGT410.10019060651972045No Hit
ACAATCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT410.10019060651972045No Hit
ACTATTCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC410.10019060651972045No Hit
TCACGAGGGCACACAAGTCTTGCAATCAAAGCCAGGTTTTCAAGAA410.10019060651972045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)