FastQCFastQC Report
Sat 31 Dec 2022
SRR5842879.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842879.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38877
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTTGGGAGACATGCCCAGACTGTCCATAGAGCATCACTTATAA610.1569051109910744No Hit
AAAGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.14661625125395478No Hit
ACACTTGGGATGGAAGAGACAGAGAGGTCCCTACATGATGCCATCA530.13632739151683515No Hit
GTTAATGGGGCAGGGCTAAAGCTGAGAGATTGAAAAATGCAGACCA520.13375517658255526No Hit
ATTCATGGGAAGGCAGAGCCGTTTCCTTCAGGTACCACACAAGCAA480.12346631684543562No Hit
CAGATAGGGAATATACAACCTGGCAAGGCTGACTAAGAAATAGAAA480.12346631684543562No Hit
AAAAACGGGGCAACAAAAAATGTGATTTGAAGGTAAGGAATGGTCT470.1208941019111557No Hit
TTCTATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT460.11832188697687579No Hit
AATAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11574967204259587No Hit
CGCTCTGGGGTGTCTCAGCACTGCTGCTTCTGCACTGACAGGAATC450.11574967204259587No Hit
GCACTCGGGATCACACCATCCTGGGCCTCAGGCTGCCTGGGAGGGG450.11574967204259587No Hit
GTTGTTGGGGGATGAGTTCTGGGGATGAAACTCAGCTTCTTATGTT450.11574967204259587No Hit
CGTACAGGGATGAGAAAGACAAAAGAAAGTGAGTCCTCTCGCTAGA450.11574967204259587No Hit
AGACATGGGGATCCCTGACTCGGGGTCGCCTTTGGAGCAGAGAGGA440.11317745710831598No Hit
TTCTCGGGGGTATATGAGGAGCAAGGAAGCAGCAAGGTCTTCCAGG440.11317745710831598No Hit
CATTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11060524217403607No Hit
CTTGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11060524217403607No Hit
AAAACTGGGGTGCACCCCCAAGGTGGACTCTCCCCAGGACCAGCTG430.11060524217403607No Hit
CGAAATGGGGAAAGATGGAGCATATGTTTTTGGCAAACTGAGCAAA430.11060524217403607No Hit
AACCAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG420.10803302723975615No Hit
GCTATGGGGGGACCCCCTAGGTTGTGCAAACCATGGAGGAGGACAC420.10803302723975615No Hit
ACAATAGGGGAATCCTTGTAACCCTTTCAAATAGTGTTATTTCCTA420.10803302723975615No Hit
TCACGAGGGCACACAAGTCTTGCAATCAAAGCCAGGTTTTCAAGAA420.10803302723975615No Hit
TTATGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC410.10546081230547624No Hit
AGTTGTGGGGAATCCATGTGTGAAGCCCTAAGCACTCACAGACGAA410.10546081230547624No Hit
CCATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10546081230547624No Hit
TACTCCTGGGGAACCAACTCGGAGTCAGCGAGCTCACCGGCAAGGC410.10546081230547624No Hit
AGCTTAGGGGTCTCCTTGTCACCTCTAAGGCCAGCTAGGATGACAG410.10546081230547624No Hit
CTGCACGGGGAGGTGGATGCCCAGGAAGGCGACAACATGGGGCGTG410.10546081230547624No Hit
TCTGAGGGGGATTATCGCGGCCCTAGCAATCGTTCACCTCCTCTTC410.10546081230547624No Hit
TTCAGGGGGGTTCTGTGGAGTCTGCGTGGGCATCGTGGGCAGTGGG410.10546081230547624No Hit
TTCCACGGGGATTACCTGGAACGTGCTCTTCTCCCCGCGCTGGCTG410.10546081230547624No Hit
TTACTTGGGACGCGCAGCGACAAAAATGGAGGCTGCGGCCGAGCCG400.10288859737119632No Hit
AGTAACGGGTGGGAGTTGCCTTTCTCCTTCCACCAGGGAGGTTCCA400.10288859737119632No Hit
CCTTCAGGGGTGCTGGGATTACAGGCATGAGCCACCATGCCGGGCC400.10288859737119632No Hit
AAACAAGGGAAAGGCAGCTGCAGCCACTAGGCCTGAGCAAGCCTCA400.10288859737119632No Hit
AGTGCAGCATTCTACCAACCCCAATAATATCCAGCCAGACTCGTGT400.10288859737119632No Hit
TAGCATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC400.10288859737119632No Hit
ATAGCAGGGATAGTCTGTGTCATAGCTACTCAGTTCTGCCTGGACA400.10288859737119632No Hit
TTGGCTGGGCTCCAAGGAAAGCTCTAGCAGTCTCCAGGGGCTGAAG400.10288859737119632No Hit
GCGTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10288859737119632No Hit
AATCTCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT400.10288859737119632No Hit
TTGAGGGGAAGTTGATTTTTCTTAGCATCCTTTTCATAATACTTGT390.10031638243691643No Hit
CTTTCAGGGATTTCTCTGTATACCTGAACATGACAGCGTGCACATA390.10031638243691643No Hit
TTCCAAGGGGAGTTCTCAGCGTCTGGGAGGTAGAAACCGCAGGATC390.10031638243691643No Hit
TGCTCAGGGGAGGAGGGAAGATGGCGGACGAGGAGAAGCTGCCACC390.10031638243691643No Hit
ATATGCGGGGGGAATTCCAATGATAGGCTAGTCACGCGCAGTACAT390.10031638243691643No Hit
TAACGAGGGTTAGCTACATGGCCCTGCTCAGACTGCCCAAGAAGCG390.10031638243691643No Hit
CCGCAAGGGGCTCAGAGTGTGGGCTTCATGGATGCCGCTGGAGTCA390.10031638243691643No Hit
TAGGACTGGGGTGCATTGCAGGAAGCAGATGCCTGGTGGCCATCGG390.10031638243691643No Hit
ACAAGCGGGGTTTTTTAACTGATGGCTCCCTTCCCCCACTGGCCTT390.10031638243691643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)