FastQCFastQC Report
Thu 19 Jan 2023
SRR5842737.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842737.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47187
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCATA200.001243562940.00000438
AGGGGGC401.8617357E-840.0000046
GTCATAC200.001243562940.00000439
GGCGTCA200.001243562940.00000436
CACGCCA200.001243562940.00000427
TTATTGG200.001243562940.0000042
TGTTTGG200.001243562940.0000042
AGGCGTC200.001243562940.00000435
CGCCACA200.001243562940.00000429
TCAATGG200.001243562940.0000042
AAGGGCG200.001243562940.0000045
CGGCGCA200.001243562940.00000422
GCACGCC200.001243562940.00000426
CGGGAGC200.001243562940.0000046
GCGTCAT200.001243562940.00000437
CTAAAGG200.001243562940.0000042
TTAATGG200.001243562940.0000042
CGCACGC200.001243562940.00000425
TCACACC200.001243562940.00000416
ACGCGGG200.001243562940.0000043
Produced by FastQC (version 0.11.5)