FastQCFastQC Report
Sat 31 Dec 2022
SRR5842400.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842400.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20404
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATAAGGGAGTATAGCAATGACCTCTGGGAGGCAGGAGGTGGAGA270.13232699470692022No Hit
ATTGTGGGGGGGGCCGGGAGGAAGGCGACGCGCGCGCAGTGGGCCT250.1225249950990002No Hit
GCATCAGGGGTAGCTGCCACAGACAACGCTCATCACCTATAGAAAT240.1176239952950402No Hit
ACTCAAAGGGGTGTTTCTGTATAATAAAGTGTCTGCCGGCTCGCGG230.1127229954910802No Hit
TAAATGGGAGAAGCTCCAGCTTTGCTTTCTGCCCAGCCCATCTTGC210.10292099588316017No Hit
TTCTGCGGGGGGCTGGGCTGGGCTGGAGGGAACAGCAGGAACTGGG210.10292099588316017No Hit
GAACTTGGGAATCGCAGTTCGGCGCGCGCAAGTCGCCGGGAGCTGT210.10292099588316017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)