FastQCFastQC Report
Sat 31 Dec 2022
SRR5842152.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842152.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21898
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCACGAGCTCATGATCCACTGCTGGAAAAAGGATCCGGAAGA240.10959905014156544No Hit
CCATGAGGGGAGGGAAAGACGACTAAAAGACAGGTCTCCTCACACC230.10503242305233355No Hit
TTCGTTGGGACAGGAATAAAGTGGTTTCTTTGTGGTGGGAAGCTAG230.10503242305233355No Hit
GCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGCTTCCTTCCGC220.10046579596310165No Hit
AAAAACTGTCTCTTATACACATCTGACGCCAGCAAGAATCTCGTAT220.10046579596310165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)