FastQCFastQC Report
Sat 31 Dec 2022
SRR5842054.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842054.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29772
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACATTTTCCCCAGCCTCCAAGTCCTCTCACCTTGCCTTACCTCT510.17130189439742038No Hit
ACAGCTGGGTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCA360.12091898428053204No Hit
AATCGCGGGAAGCACGAATTGCTCAGTCTTGCTAGCAGCAATCATC350.1175601236060728No Hit
CAATATGGGCATGGTTATGAGGACTTACGGACTAGAGTTCTGGGAT350.1175601236060728No Hit
GCACCTGGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTCGTGAAG350.1175601236060728No Hit
TGAACAGGGAGAGATCACCAATGCCTGCTTTGAGCCAGCCAACCAG340.1142012629316136No Hit
GCAGCAGGGGTCCGAAGGGCACAAGTGTGACCGCCTCTCTGTAGCT320.10748354158269516No Hit
CTATATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA310.10412468090823593No Hit
TACCTAGGCAAGCTGTGGCGCTTGCTGAGTGAAAGCGAGAAGAGGC300.1007658202337767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)