FastQCFastQC Report
Sat 31 Dec 2022
SRR5842053.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842053.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33561
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.12514525788862071No Hit
GCACCTGGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTCGTGAAG370.11024701290188016No Hit
AACCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.11024701290188016No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTTGTCCCATCTCGTAT350.10428771490718393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)