FastQCFastQC Report
Sat 31 Dec 2022
SRR5842034.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842034.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70430
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTGGGGGAAGATTGGTGGCCATGGTGCTGAATATGGAGCTGAAG1850.26267215675138433No Hit
GCCCAGGTCAAGGGTCACGGCAAGAAGGTCGCCGATGCTCTGGCCA1700.24137441431208292No Hit
GCTGCCTGGGGGAAGATTGGTGGCCATGGTGCTGAATATGGAGCTG1240.1760613374982252No Hit
GCTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCACTG1220.17322163850631833No Hit
GAAGCCCTGGAAAGGATGTTTGCTAGCTTCCCCACCACCAAGACCT1210.1718017890103649No Hit
CACTTTGATGTAAGCCACGGCTCTGCCCAGGTCAAGGGTCACGGCA1180.16754224052250463No Hit
GCAGCAAGAAGGTGATAACTGCCTTTAACGATGGCCTGAATCACTT970.1377254011074826No Hit
CTGCCCAGGTCAAGGGTCACGGCAAGAAGGTCGCCGATGCTCTGGC960.13630555161152919No Hit
CTGCCCAGGTCAAGGGTCACGGCAAGAAGATCGCCGATGCGCTGGC910.12920630413176204No Hit
GCCTGGGGGAAGATTGGTGGCCATGGTGCTGAATATGTAGCTGAAG860.1221070566519949No Hit
GTCAAAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG800.11358795967627432No Hit
CTACTTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG760.1079085616924606No Hit
CACTTAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG760.1079085616924606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)