FastQCFastQC Report
Sat 31 Dec 2022
SRR5842033.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842033.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97795
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTGGGGGAAGATTGGTGGCCATGGTGCTGAATATGGAGCTGAAG1960.20041924433764507No Hit
GCCCAGGTCAAGGGTCACGGCAAGAAGGTCGCCGATGCTCTGGCCA1520.15542716907817372No Hit
GCTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCACTG1480.1513369804182218No Hit
GCTGCCTGGGGGAAGATTGGTGGCCATGGTGCTGAATATGGAGCTG1130.11554782964364231No Hit
CACTTTGATGTAAGCCACGGCTCTGCCCAGGTCAAGGGTCACGGCA1080.1104350938187024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)