FastQCFastQC Report
Sat 31 Dec 2022
SRR5841556.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5841556.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23186
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACAAGCTGACTATTGTGTCTCCCACATGAAGCCCTATGTGGATG280.1207625291123954No Hit
GCTGATGGGTTTCTCTGCCTTGCCCCAGATCACATGCCTTTCCTGG270.11644958164409558No Hit
ATGGCTGGGGTTACAGAGATCCGACTTCAAAAGGCAGGGTCTGAGT270.11644958164409558No Hit
CTGCTGGGGGGAATCCTGTGGCATCCATGAAACTACATTCAATTCC250.1078236867074959No Hit
CCGCATGGGAGCCAATGAGACAGAAATTCGAGGGAGGGGGACAAAG240.10351073923919607No Hit
CTGTGAGGGTCTGGGCATGGGATTTTCAGGCCAATGGTTAAGTCTG240.10351073923919607No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)