FastQCFastQC Report
Sat 31 Dec 2022
SRR5840973.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840973.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21063
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTGGGGTGTGAAAGACATTGACTGAAGAAGCATACAATTTGT280.13293452974410103No Hit
TGAGCCGGGGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCAC280.13293452974410103No Hit
TAATCAGGGTATGTGGGAAAGTCTGCCTGCCCCCGATGTGAGCCTG280.13293452974410103No Hit
TTAGCAGGGCGATCTTATGGAGGGGTGTTGCCCATGGATGGTAACT260.12343920619095096No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTTAACAATCTCGTAT230.10919622086122585No Hit
GTTTACGGGAGACGCCGCCATGATCATCCCGGTGCGCTGCTTCACC220.10444855908465081No Hit
TAGCGCGGGGAGGCTAAAACTACAGTCTAGAAGTATTAATCTGATG220.10444855908465081No Hit
AACTGCGGAGGGTTTATGATCCCAGTGGGATCAGAGCTCATCACCA220.10444855908465081No Hit
TTTACCGGGACTGGACCTGGGGGCGATCCCTGCCGTTGATCCTCAG220.10444855908465081No Hit
CCGCGGGGACTCGGAGCGGCTACCGCACAGTTAAGCATCAGCAGAC220.10444855908465081No Hit
TAGATAGGGGCTCAGCAAATGGGAAGAACAGCCTTGAACAGCTCAG220.10444855908465081No Hit
TCAAATGGTCTTCCCACTTATAGCCACATGATGACTGATAGCAAGT220.10444855908465081No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)