FastQCFastQC Report
Sat 31 Dec 2022
SRR5840972.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840972.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41724
Sequences flagged as poor quality0
Sequence length46
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAATGGTCTTCCCACTTATAGCCACATGATGACTGATAGCAAGT550.13181861758220687No Hit
ATAATGGGCGTTAATATGCAATAAATAATAGTACGAAGATTATAAC450.10785159620362382No Hit
CAAATTGGGGTGTGAAAGACATTGACTGAAGAAGCATACAATTTGT450.10785159620362382No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)