FastQCFastQC Report
Sat 31 Dec 2022
SRR5840931.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840931.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25511
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCACGGTTTCCAGGTTTGTATGCTATAGTTTTTAATCCTATGGT290.1136764532946572No Hit
CAATCAGGGGATTGGCTTTGCCATCTTGACTCAGTGTGTCCCAGTG280.10975657559484144No Hit
TTTAATGGGTCCCACTCTTCCACCTTCGATGCCGGGGCTGGCATTG260.10191682019520991No Hit
CACTCAGGAGAAAAAAGCAAAGTAACTTGTTAAAAATTGACTTGCA260.10191682019520991No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)