FastQCFastQC Report
Sat 31 Dec 2022
SRR5840773.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840773.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28505
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTATGGGGGCACTCTGCTCCTTCCAGATCTACAGCGTGCCCTGG370.1298017891597965No Hit
AATTAAGGGGGGTGTTTGATGTCTCCAACGCTGACCGCCTGGGCTT330.11576916330468338No Hit
CATTCAGGGGCGCACAGTACTAGGCATCGTCATCCAATGCGACGAG330.11576916330468338No Hit
CTCTAAGGGGGAGTATTGAGACCCTGCAGCGATGCTGAGCAGGTTT320.1122610068409051No Hit
TTCATTGGGTCACGTGGGCCTGGTCTTTTGTGTGTGAGGCCCTTGA320.1122610068409051No Hit
TTAACAAGGGGGGAGGGGAAACTTGTGAATGTAACTTGCCTGTGCC320.1122610068409051No Hit
ATCGCGGGATGACAAGTTCAGTGCGATGAAGTACGAGCAGGGCACG320.1122610068409051No Hit
TCCGATGGGGAAAGACTGATTTATGTCTCAAAAGACAAGAGTCTCA310.10875285037712681No Hit
CCAAATGGGTGGGGGAACAGAGCTAGTGCTGAGAGGCCTAAAGGTC300.10524469391334855No Hit
ATGTTCGGGAGAATGATAGCAACCAGTCACGAAACAGCAACAGGGG300.10524469391334855No Hit
TCGCCCGGGCCCAAGGGCTTTAACATGCTAGGCAGGCACACTACCA290.10173653744957026No Hit
CAAAAAGGGAGAAGCTGCGTGTGAAGAAGATCCATGAGAATGAGAA290.10173653744957026No Hit
TTAAGCGGGAGGTCACTGGATACCTGTCCTTGCGTTCTCCAGAAAG290.10173653744957026No Hit
TCACAGGGGGTGCTCCTTCCAGATCTACAGCGTGCCCTGGAAAGGC290.10173653744957026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)