FastQCFastQC Report
Sat 31 Dec 2022
SRR5840772.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840772.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46854
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAAGGGGGAGTATTGAGACCCTGCAGCGATGCTGAGCAGGTTT550.1173859222264908No Hit
TTACACGGGGCAGTACAACAAAAACAAAAAGTAATTTGACTAACCC490.10458018525632817No Hit
TGTAATGGGGGAGAGCTCCGCTCCTTGTCGCCGCCAAGACCAAGAT480.10244589576130106No Hit
TGAACAGGGATTTTTTGGATGTGGAGATGGGCCGAACTACATGTAC470.10031160626627397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)