FastQCFastQC Report
Sat 31 Dec 2022
SRR5840747.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840747.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30417
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGGTCAAGGGTCACGGCAAGAAGATCGCCGATGCGCTGGCCA610.20054574744386364No Hit
CGCAAAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT350.11506723213992175No Hit
TAATAAGGGGACACTTCTGATTCTGACAGACTCAGGAAGAAACCAT350.11506723213992175No Hit
GCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGC330.10849196173192623No Hit
TAGCTGGGGCAAGAAGGTGATAACTGCCTTTAACGATGGCCTGAAT320.10520432652792845No Hit
TTCCTGGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG310.1019166913239307No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)