FastQCFastQC Report
Sat 31 Dec 2022
SRR5840665.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840665.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23817
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGGGGGACACTTCATAGTCATCCAGATCAATTAATAAGCCAGT280.11756308519124996No Hit
CTATAGGGGATCCATGCTAGAACCATGGTATCCCATGGGAAGCAGA270.11336440357727674No Hit
ACTTCGGGGATGTGGTACCCAGTCCTGACCAAGAATCTGATCCCAG270.11336440357727674No Hit
GATACTGGGCAACCAACAATCCTGCCCAGGCTAACCTGCGCCAGGA260.10916572196330353No Hit
TTAGTAGGGAGAAGGGCAGGATGTACTTGCCCTTGGTTGGACTAAG250.10496704034933031No Hit
TCAATTGGGGTACCATCCAGTTTGTGGACTGGTGCCCCACTGGCTT240.10076835873535711No Hit
GGCATTGGGACCACGACTTCAACGTCCTGAGTACCTTCTCCTCACT240.10076835873535711No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)