FastQCFastQC Report
Sat 31 Dec 2022
SRR5840631.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840631.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30132
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGC440.14602416036107793No Hit
TGGGCTGGGTCTGCTTCACCAATCACCCAACCTGAGTCCCCCAGCT430.1427054294437807No Hit
CACAGCGGGGTCGCAACGGTTGTTAATATGACAGGCCGCTAAAGAC380.12611177485729458No Hit
TCATTAGGGGGGAGTGAGACGTCGAGCTGAGCGATCGCAGCGGAGA370.12279304393999733No Hit
ATTATAGGGGATCCTGAGTGACCTGGGCTCTGGGGGCAATGTGGAT350.11615558210540289No Hit
TATACCGGGATAGTGGAGTTTGCAACTGTCAGAGCTGCGGAGCTGG340.11283685118810567No Hit
CACCAAGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC340.11283685118810567No Hit
GAGCTGGGATAAGACTTACAAACTTCCCTGCCGAATATTGTATCAA340.11283685118810567No Hit
CAGCAAGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCCT330.10951812027080844No Hit
AGTCTAGGGGGCTTCACAAGCTGTACCAGGAGAAGGATGCCCTGCA320.10619938935351123No Hit
GTTCAAGGGTGCCGGGAGTCTGGCCTATGCTCTCTGCTCACACTTG320.10619938935351123No Hit
CAAAGTGGGAAGGACTACGATATGGTATAATTCTATTCATCGTCTC320.10619938935351123No Hit
TATAACGGGAATGATGTTTATGCAGGTTGTCTTTGATTGTTTGTTT320.10619938935351123No Hit
TGGAGGGGGGAAGAGCCAAGTATTGTGGTTTGGAGGGTGAGCGAAA320.10619938935351123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)