FastQCFastQC Report
Sat 31 Dec 2022
SRR5840630.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840630.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48409
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGC600.12394389473031873No Hit
AGGCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.11361523683612552No Hit
TGGTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.10741804209960958No Hit
AAGCCTGGGAATGCAATCTTAATTTGCCTGTGTGGGACCCAAGGGT520.10741804209960958No Hit
CTTTGCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT510.10535231052077093No Hit
AGATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.10535231052077093No Hit
CACAGCGGGGTCGCAACGGTTGTTAATATGACAGGCCGCTAAAGAC500.10328657894193229No Hit
CATTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.10328657894193229No Hit
CTACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC490.10122084736309364No Hit
CCTAGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC490.10122084736309364No Hit
TGCTGGGATCTACACACGGGGGGGAATTCTGGACATTAATTAGGGC490.10122084736309364No Hit
TGGGCTGGGTCTGCTTCACCAATCACCCAACCTGAGTCCCCCAGCT490.10122084736309364No Hit
CTAATAGGGGAATGGGCTTGAAGATTTTGTACATACGTGTGTGCAC490.10122084736309364No Hit
GTTACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.10122084736309364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)