FastQCFastQC Report
Sat 31 Dec 2022
SRR5840625.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840625.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38981
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGCTTCCTTCCGC480.12313691285498064No Hit
GCTAATGGGGTCCATGTTACCGATCTTTCTGGCAAGGAAACCATCT450.11544085580154435No Hit
GCTAATGGGGCAGAAGAAGCAACATGAAGGCAGCAAAAAGAAAGCG440.1128755034503989No Hit
AAGCAAGGGGAGTCCAGAGCCTGCAACCTACTTCCTTCTAGCTGCA440.1128755034503989No Hit
GGGCCAGGGAGAGGAGAGGCAGATGTCACGGACACGAGGACGGTAG440.1128755034503989No Hit
ATCATTGGGCTCTTCCGGGGACGGTGCTCAGAGGCACTCAGGATGG430.11031015109925348No Hit
GATCAAGGGATTAATATGTCGCCTGTATAAATTGTACCTGTTAGGT430.11031015109925348No Hit
ACGTATGGGGATCTTAGACTGGGAAGGTGAAGATGGCTGCCGCCCG420.10774479874810805No Hit
TGAAAAGGGAATGGAGAGTCACCTAGACACTCCCTACAATGTCCCA420.10774479874810805No Hit
GTCAACGGGCCAACACCGGAGGTGTTGATTCCTCCTCACAAAAGAT420.10774479874810805No Hit
ACTATTGGGGCGCAGACGCTTGAAACGATGTGACATCGCTTCTAGA400.10261409404581719No Hit
CAAGGGGGCCATTACTGCCGGAAAAGGTCCAGCAGAGCTCAGCAGC400.10261409404581719No Hit
GGCCCACTACGAATGCTGTGACTCACATGGGTGATGCTGTATGCCT400.10261409404581719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)