FastQCFastQC Report
Sat 31 Dec 2022
SRR5840624.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840624.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55862
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAATGGGGCAGAAGAAGCAACATGAAGGCAGCAAAAAGAAAGCG730.1306791736779922No Hit
TGAACAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTA680.12172854534388314No Hit
GTACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.1145680426765959No Hit
TGCATCTGGGGGGACTTCATTCTGAGGAACAGCCACTTCTGGCCAG630.11277791700977408No Hit
TTCTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.10561741434248684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)