FastQCFastQC Report
Sat 31 Dec 2022
SRR5840407.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840407.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24919
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATAGTGGGGGACACCCTGGAGTCAGATGGCTCCTCACACTGGGAA300.12039006380673382No Hit
GAAGAGGGTAAACCATGTTCTTCCAGCAATCATAGAACTTCAAACT300.12039006380673382No Hit
ACTGCAGGGGTCAGGGGGGCCATGGGGAGCTCCGCCTCCTCCCTGG260.1043380552991693No Hit
ATCACTGGGCAGACCTGGTGGTGGGGCTCTGCACTGGGCAGATCAA250.10032505317227818No Hit
AGAACTGGGGGCTGCCAGCGATGACTACAGAGGATGCTTGGACCTG250.10032505317227818No Hit
TGCACAGGGGAGGGGTGGGAACTGCAGTCTTGCTAGTATGTCTGCG250.10032505317227818No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)