FastQCFastQC Report
Sat 31 Dec 2022
SRR5840377.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840377.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14726
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAATAGGGCGATCTTCTGCAGGGTGCTCCTTCTCCACTGTCAGGG220.14939562678256146No Hit
TAGACTGGGAGAACAAGCCCCAGCTCAGGTGGCATGGTTGGCTCAG190.1290234958576667No Hit
TACTACGGGACTGTGGTACAGATGGACAGACAGACACCCCTTCAGT180.12223278554936846No Hit
TAGCACAGGGTGACGAGGGGCCAGCACTGGCCTCTGTCTCAGGACA180.12223278554936846No Hit
TTCCATGGGCACCGTCCTGCTGTCTATATCAACCAACACCTTTTCT170.11544207524107021No Hit
TTGACAGGGGGAAAAGGTCCAGCAGAGCTCAGCAGCCAAGATGTGT170.11544207524107021No Hit
GTGACAGGGGCCCTGGGCTGGGCCACTGCTGAACTCATTATGTCCC170.11544207524107021No Hit
TAAAATGGGGCTGATGAGGAAGGCACTCTGCTCCTTCCAGATCTAC160.10865136493277197No Hit
ATGCGAGGGCGAACTACATGTACCAAGTCCCAGACAAATTTGACTG150.10186065462447372No Hit
TTGTAGGGGCTGATGAGGAAGGCACTCTGCTCCTTCCAGATCTACA150.10186065462447372No Hit
GCGCGGGTAGGAAGACCCCAGATCTACAGGCTTCTGGGAGGAAGGC150.10186065462447372No Hit
AAACCTGGGTCTGTATCCCAGCACTGGCACTACAGGTGTGCACAAT150.10186065462447372No Hit
CTTAAGGGGACAACAAGGGCAGCAACGATGCGTACCACAGCCGCGC150.10186065462447372No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)