FastQCFastQC Report
Thu 19 Jan 2023
SRR5840101.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5840101.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59254
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTTAGG200.001246155640.02
ACAACGG200.001246155640.02
TCCATGG257.705402E-540.02
CTCAAGG304.78971E-640.02
TTGCTGG600.040.02
ATAATGG352.9914372E-740.02
TGGGTAT257.705402E-540.06
ATAGCAA200.001246155640.010
ACGGGCA200.001246155640.05
ACGGGAT200.001246155640.05
TGTTGGG257.705402E-540.03
CTAACGG200.001246155640.02
CGGGCAC257.705402E-540.06
ACTACGG200.001246155640.02
TAGGGCC304.78971E-640.05
TAGGGAT200.001246155640.05
AACTGCG257.705402E-540.01
GCAGGGT200.001246155640.04
TTTATGG200.001246155640.02
AGGGGTA200.001246155640.06
Produced by FastQC (version 0.11.5)