Basic Statistics
Measure | Value |
---|---|
Filename | ERR1633521.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 319418 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 1820 | 0.569786298830999 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1352 | 0.42326982198874197 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 695 | 0.21758322949865067 | No Hit |
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC | 533 | 0.16686598751479254 | No Hit |
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGG | 527 | 0.16498757114502 | No Hit |
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTC | 498 | 0.15590855869111947 | No Hit |
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTG | 457 | 0.1430727134976739 | No Hit |
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAGCCAAGCAT | 423 | 0.13242835406896292 | No Hit |
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAA | 413 | 0.12929766011934204 | No Hit |
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC | 401 | 0.12554082737979702 | No Hit |
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACAT | 400 | 0.12522775798483493 | No Hit |
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACAT | 377 | 0.1180271619007069 | No Hit |
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG | 370 | 0.1158356761359723 | No Hit |
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAA | 349 | 0.10926121884176847 | No Hit |
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG | 342 | 0.10706973307703387 | No Hit |
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATG | 342 | 0.10706973307703387 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 327 | 0.10237369215260256 | No Hit |
GTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAA | 322 | 0.10080834517779212 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAAGCGT | 25 | 1.2316307E-4 | 36.999996 | 16 |
TGCGGTA | 50 | 7.2977855E-9 | 33.3 | 36 |
CCGGCAG | 45 | 3.9963525E-6 | 28.777777 | 16 |
CGCGCGA | 40 | 5.9269143E-5 | 27.75 | 32 |
GCCGGCA | 40 | 5.9269143E-5 | 27.75 | 15 |
CGCGATA | 40 | 5.9269143E-5 | 27.75 | 34 |
TTGCGGT | 55 | 6.2379695E-7 | 26.90909 | 35 |
GGTATCA | 350 | 0.0 | 26.428572 | 1 |
ATACGGA | 35 | 8.855321E-4 | 26.42857 | 4 |
CGCTCTC | 50 | 9.064281E-6 | 25.899998 | 29 |
TCACGGT | 45 | 1.3202915E-4 | 24.666666 | 1 |
CACGGTA | 45 | 1.3202915E-4 | 24.666666 | 2 |
TTCGCCG | 55 | 1.8970872E-5 | 23.545454 | 24 |
CGGAATT | 40 | 0.0019281524 | 23.125 | 27 |
GCGTTAA | 40 | 0.0019281524 | 23.125 | 19 |
CGTTAAT | 40 | 0.0019281524 | 23.125 | 20 |
TCTGGAC | 40 | 0.0019281524 | 23.125 | 3 |
GCAAGCG | 50 | 2.6961873E-4 | 22.199999 | 15 |
GCGATAC | 50 | 2.6961873E-4 | 22.199999 | 35 |
GTATCAA | 910 | 0.0 | 21.956043 | 1 |