Basic Statistics
Measure | Value |
---|---|
Filename | ERR1633499.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 750942 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5162 | 0.6874032881367669 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3908 | 0.5204130279036198 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2014 | 0.26819647855626666 | No Hit |
ATTGAAAGCTGAGTATTTTTAAGACAAAGGTTTCAGGAAGAAA | 1138 | 0.15154299533119733 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 973 | 0.12957059266894114 | No Hit |
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAA | 953 | 0.1269072711341222 | No Hit |
GAATACACCTCTTAAATTTACAGGACTTAACATTTCAAACATC | 764 | 0.10173888263008328 | No Hit |
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGA | 753 | 0.10027405578593286 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTTAT | 35 | 8.8665204E-4 | 26.42857 | 1 |
GGTATCA | 1005 | 0.0 | 23.37811 | 1 |
GTATCAA | 2545 | 0.0 | 22.607073 | 1 |
ATCTCGC | 110 | 3.846253E-8 | 18.5 | 11 |
CGAACTA | 110 | 3.846253E-8 | 18.5 | 24 |
CGAGTCG | 60 | 9.232749E-4 | 18.5 | 21 |
GCGAACT | 110 | 3.846253E-8 | 18.5 | 23 |
ACGGCGT | 60 | 9.232749E-4 | 18.5 | 35 |
AGCATCG | 50 | 0.0070326673 | 18.499998 | 7 |
GTATAAC | 50 | 0.0070326673 | 18.499998 | 1 |
TTTACGG | 65 | 0.0015792443 | 17.076923 | 32 |
CGGTACA | 65 | 0.0015792443 | 17.076923 | 33 |
GTTTATA | 245 | 0.0 | 16.612246 | 1 |
GTATTAG | 150 | 4.660251E-9 | 16.033333 | 1 |
TTAGGGC | 70 | 0.0025913715 | 15.857142 | 3 |
AAAGCGA | 140 | 3.4669938E-8 | 15.857142 | 20 |
CGGCAAG | 200 | 3.6379788E-12 | 15.724999 | 18 |
TCTCGCC | 130 | 2.585275E-7 | 15.653846 | 12 |
TGCTCGG | 120 | 1.9332274E-6 | 15.416667 | 10 |
TTGGCCG | 145 | 5.3361873E-8 | 15.310345 | 31 |