Basic Statistics
Measure | Value |
---|---|
Filename | ERR1632892.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 450681 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 1661 | 0.368553367015694 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1205 | 0.2673731530727943 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 600 | 0.1331318604511839 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGACCT | 40 | 0.0019293756 | 23.125 | 33 |
GGTATCA | 350 | 0.0 | 21.671429 | 1 |
GTATCAA | 965 | 0.0 | 21.663212 | 1 |
TATACTG | 45 | 0.0038222533 | 20.555557 | 5 |
GTATTAG | 195 | 0.0 | 19.923077 | 1 |
CGAGTCG | 65 | 6.890234E-5 | 19.923077 | 21 |
TATTAGC | 95 | 1.6704689E-7 | 19.473684 | 2 |
TTAGCTA | 50 | 0.0070284083 | 18.5 | 4 |
AGGACCG | 50 | 0.0070284083 | 18.5 | 5 |
GCCGTCC | 70 | 1.21711135E-4 | 18.5 | 27 |
GCGTAAT | 50 | 0.0070284083 | 18.5 | 1 |
TGTGCAA | 125 | 8.536517E-9 | 17.76 | 10 |
TTAACGG | 115 | 6.379378E-8 | 17.69565 | 35 |
GAGTCGC | 75 | 2.0637552E-4 | 17.266666 | 22 |
TTTCGGG | 65 | 0.0015779193 | 17.076923 | 22 |
CGCCGTC | 80 | 3.3768604E-4 | 16.1875 | 26 |
TCCGCCG | 70 | 0.0025892158 | 15.857142 | 31 |
CGCGCGA | 70 | 0.0025892158 | 15.857142 | 36 |
GTGTACA | 70 | 0.0025892158 | 15.857142 | 1 |
TCGCCGT | 95 | 7.044463E-5 | 15.578948 | 25 |