Basic Statistics
Measure | Value |
---|---|
Filename | ERR1632885.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 332314 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 1137 | 0.3421462833344367 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 837 | 0.2518702191300998 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 449 | 0.13511317609249085 | No Hit |
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG | 347 | 0.1044193142630163 | No Hit |
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTC | 340 | 0.10231287276491512 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACTGACG | 20 | 0.0018400534 | 37.0 | 17 |
CTCGTAC | 25 | 0.005490792 | 29.599998 | 12 |
CGTACTG | 25 | 0.005490792 | 29.599998 | 14 |
AGCTTCG | 50 | 9.0657195E-6 | 25.899998 | 21 |
GGTATCA | 235 | 0.0 | 23.617022 | 1 |
CGCTCTC | 55 | 1.8973866E-5 | 23.545454 | 29 |
ATAAACC | 55 | 1.8973866E-5 | 23.545454 | 3 |
CGAGTCG | 40 | 0.0019283143 | 23.125002 | 21 |
TGAGCGG | 40 | 0.0019283143 | 23.125002 | 30 |
GTATCAA | 600 | 0.0 | 22.508333 | 1 |
AGTCGCC | 50 | 2.6965048E-4 | 22.199999 | 23 |
GGGGCGA | 50 | 2.6965048E-4 | 22.199999 | 30 |
GCCGCTC | 60 | 3.716034E-5 | 21.583334 | 27 |
CATAATA | 60 | 3.716034E-5 | 21.583334 | 2 |
TTCGCCG | 70 | 5.0839335E-6 | 21.142857 | 24 |
GTACTGG | 80 | 6.929513E-7 | 20.8125 | 1 |
GTATTAT | 45 | 0.0038201732 | 20.555555 | 1 |
CCCTAGA | 45 | 0.0038201732 | 20.555555 | 1 |
CGAGGGT | 100 | 1.281478E-8 | 20.349998 | 16 |
ACTAGCA | 55 | 5.132526E-4 | 20.181818 | 8 |