Basic Statistics
Measure | Value |
---|---|
Filename | ERR1632754.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17267 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTT | 35 | 0.20269878959865642 | RNA PCR Primer, Index 17 (95% over 21bp) |
GGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAA | 29 | 0.16795042566745816 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTTATA | 45 | 1.2509403E-4 | 24.666668 | 37 |
CTCTTAT | 65 | 0.0014963397 | 17.076923 | 36 |
TCTCTTA | 85 | 0.008922946 | 13.058823 | 35 |
CCTGTCT | 135 | 0.0012597893 | 10.962963 | 36 |
TGTCTCT | 170 | 6.1068844E-5 | 10.882353 | 37 |
CTGTCTC | 225 | 9.005345E-6 | 9.866667 | 37 |