Basic Statistics
Measure | Value |
---|---|
Filename | ERR1632606.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 70318 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 55 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAA | 119 | 0.16923120680337894 | No Hit |
ACCATGAAGTGCGATTGCCTCGGTGATAACGACATTGGGGCCA | 87 | 0.12372365539406695 | No Hit |
GAGTTAGCCGGTGCTTCTTCTGCGGGTAACGTCAATGAGCAAA | 72 | 0.10239199067095196 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCCGTG | 45 | 1.0556323E-7 | 32.88889 | 7 |
CGTGCCA | 45 | 1.0556323E-7 | 32.88889 | 10 |
AACTCCG | 45 | 1.0556323E-7 | 32.88889 | 5 |
GGTAATA | 50 | 2.6598536E-7 | 29.6 | 25 |
CTAACTC | 50 | 2.6598536E-7 | 29.6 | 3 |
GTACTTA | 25 | 0.005461746 | 29.6 | 1 |
TCCGTGC | 50 | 2.6598536E-7 | 29.6 | 8 |
GCTAACT | 50 | 2.6598536E-7 | 29.6 | 2 |
TAACTCC | 50 | 2.6598536E-7 | 29.6 | 4 |
CGGTAAT | 55 | 6.122373E-7 | 26.90909 | 24 |
GTGCCAG | 55 | 6.122373E-7 | 26.90909 | 11 |
GCGGTAA | 50 | 8.933628E-6 | 25.900002 | 23 |
TGACCAT | 50 | 8.933628E-6 | 25.900002 | 10 |
GTAATAC | 60 | 1.3078225E-6 | 24.666668 | 26 |
ACTCCGT | 60 | 1.3078225E-6 | 24.666668 | 6 |
GGCTAAC | 60 | 1.3078225E-6 | 24.666668 | 1 |
AGCCGCG | 55 | 1.8699357E-5 | 23.545454 | 19 |
CGCGGTA | 55 | 1.8699357E-5 | 23.545454 | 22 |
CCGCGGT | 55 | 1.8699357E-5 | 23.545454 | 21 |
CGCGCGA | 40 | 0.0019133065 | 23.125002 | 28 |