ERR1632083.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1632083.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	42231
Sequences flagged as poor quality	0
Sequence length	43
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	1068	2.5289479292462884	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	944	2.235324761431176	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	722	1.7096445738912174	No Hit
TCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGTCTT	347	0.8216712841277735	TruSeq Adapter, Index 11 (95% over 23bp)
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	291	0.6890672728564324	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGT	186	0.4404347517226682	No Hit
CATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGTC	162	0.3836044611778078	TruSeq Adapter, Index 11 (95% over 21bp)
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	115	0.27231180886078943	No Hit
ACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCC	103	0.24389666358835926	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	99	0.23442494849754922	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATG	95	0.22495323340673912	No Hit
CTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGTCTTC	87	0.20600980322511897	RNA PCR Primer, Index 11 (95% over 24bp)
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57	0.13497194004404348	No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	56	0.13260401127134097	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50	0.11839643863512585	No Hit
CACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCG	46	0.10892472354431579	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTC	20	0.00182192	37.0	37
ATATGCC	25	0.0054372954	29.6	9
GCCGTCT	70	1.833323E-7	23.785715	36
CCGTCTT	75	3.5674384E-7	22.2	37
GGTATCA	375	0.0	20.720001	1
TCTTATA	45	0.0037659777	20.555555	37
GTACCTG	50	0.0069259135	18.5	35
TATGCCG	90	2.0541356E-6	18.5	33
ATGCCGT	90	2.0541356E-6	18.5	34
GGAAGCA	60	9.0374425E-4	18.5	8
GCGAGGA	50	0.0069259135	18.5	9
TGCCGTC	95	3.4429522E-6	17.526316	35
CTCTTAT	85	2.6239417E-5	17.411764	37
GGGAAGC	80	3.2870393E-4	16.1875	7
ACTGCCC	70	0.0025374421	15.857143	23
GTATGCC	120	1.8303454E-6	15.416666	32
CGTATGC	110	1.38709565E-5	15.136364	31
GTATCAA	525	0.0	14.799999	2
ACCTGTC	90	8.043661E-4	14.388888	37
TGGGAAG	90	8.043661E-4	14.388888	6