ERR1632080.fastq FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	ERR1632080.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2612
Sequences flagged as poor quality	0
Sequence length	43
%GC	51

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TCTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCCGTCTT	65	2.4885145482388973	TruSeq Adapter, Index 1 (95% over 22bp)
CATCTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCCGTC	45	1.7228177641653903	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCTCAGGATCTCGT	35	1.339969372128637	No Hit
ACACATCTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCC	30	1.1485451761102603	No Hit
ATACACATCTCCGAGCCCACGAGACATCTCAGGATCTCGTATG	28	1.0719754977029097	No Hit
CTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCCGTCTTC	23	0.880551301684533	RNA PCR Primer, Index 1 (95% over 23bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	11	0.4211332312404288	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	7	0.2679938744257274	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6	0.22970903522205208	No Hit
CTAATAGGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGC	5	0.19142419601837674	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	4	0.1531393568147014	No Hit
GTTCCGACCTGCACGAATGGCGTAACGATGGCCACACTGTCTC	4	0.1531393568147014	No Hit
GTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTG	4	0.1531393568147014	No Hit
GTCTCAGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGC	3	0.11485451761102604	No Hit
TTAATAAACAGTCGCAGCCACCGATTTTTTGCAACCCATTCAT	3	0.11485451761102604	No Hit
CACATCTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCCG	3	0.11485451761102604	No Hit
CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGC	3	0.11485451761102604	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers