##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR1631425.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3285161 Sequences flagged as poor quality 0 Sequence length 43 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.84819069750311 34.0 33.0 34.0 31.0 34.0 2 33.020501278323955 34.0 33.0 34.0 31.0 34.0 3 33.13207998025059 34.0 33.0 34.0 31.0 34.0 4 36.45744698661649 37.0 37.0 37.0 35.0 37.0 5 36.4391142473687 37.0 37.0 37.0 35.0 37.0 6 36.484723579757585 37.0 37.0 37.0 35.0 37.0 7 36.47434722377381 37.0 37.0 37.0 35.0 37.0 8 36.46257885077779 37.0 37.0 37.0 35.0 37.0 9 38.30945880582413 39.0 39.0 39.0 37.0 39.0 10 38.27512532871296 39.0 39.0 39.0 37.0 39.0 11 38.33093690080943 39.0 39.0 39.0 37.0 39.0 12 38.116610418789215 39.0 39.0 39.0 37.0 39.0 13 38.24082381350564 39.0 39.0 39.0 37.0 39.0 14 39.762199478199086 41.0 40.0 41.0 38.0 41.0 15 39.7583445681962 41.0 40.0 41.0 38.0 41.0 16 39.74410964942053 41.0 40.0 41.0 38.0 41.0 17 39.74226012058465 41.0 40.0 41.0 38.0 41.0 18 39.73537522209718 41.0 40.0 41.0 38.0 41.0 19 39.74529010906924 41.0 40.0 41.0 38.0 41.0 20 39.721560678456854 41.0 40.0 41.0 38.0 41.0 21 39.690377731867635 41.0 40.0 41.0 37.0 41.0 22 39.63941767237588 41.0 40.0 41.0 37.0 41.0 23 39.57453805155973 41.0 40.0 41.0 37.0 41.0 24 39.541716829099094 41.0 39.0 41.0 37.0 41.0 25 39.526799143177456 41.0 39.0 41.0 37.0 41.0 26 39.45550431166083 41.0 39.0 41.0 37.0 41.0 27 39.38483684665683 41.0 39.0 41.0 36.0 41.0 28 39.2866462252535 41.0 39.0 41.0 36.0 41.0 29 39.206472072449415 41.0 39.0 41.0 36.0 41.0 30 39.14650758364659 41.0 39.0 41.0 35.0 41.0 31 39.090736496628324 40.0 39.0 41.0 35.0 41.0 32 39.00673848252795 40.0 39.0 41.0 35.0 41.0 33 38.90384398207576 40.0 39.0 41.0 35.0 41.0 34 38.854954445155045 40.0 38.0 41.0 35.0 41.0 35 38.75253511167337 40.0 38.0 41.0 35.0 41.0 36 38.69465119061136 40.0 38.0 41.0 35.0 41.0 37 38.62485735097915 40.0 38.0 41.0 35.0 41.0 38 38.52488477733664 40.0 38.0 41.0 35.0 41.0 39 38.438337420905704 40.0 38.0 41.0 35.0 41.0 40 38.328115425697554 40.0 38.0 41.0 35.0 41.0 41 38.228488040616575 40.0 37.0 41.0 34.0 41.0 42 38.099364079873105 40.0 37.0 41.0 34.0 41.0 43 37.179714479746956 39.0 36.0 41.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 4.0 12 3.0 13 5.0 14 2.0 15 6.0 16 15.0 17 28.0 18 56.0 19 111.0 20 241.0 21 444.0 22 856.0 23 1365.0 24 2181.0 25 3404.0 26 5145.0 27 7075.0 28 10472.0 29 14513.0 30 19437.0 31 25458.0 32 33219.0 33 45462.0 34 67663.0 35 98756.0 36 161266.0 37 309153.0 38 691561.0 39 1787257.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.76420546816427 18.243611195920078 12.950111120885705 26.04207221502995 2 19.62759207235201 19.96845816689045 33.65737630514912 26.746573455608413 3 20.28978184022031 21.410457508779633 28.564231707365334 29.735528943634726 4 14.864842240608603 15.643525538017771 32.94791335949745 36.54371886187617 5 16.584788386322618 34.5387334136744 31.80328148300799 17.073196716994996 6 34.83028685656502 33.544809523795024 15.794477043895261 15.830426575744688 7 30.559476384871243 29.28815360951868 20.03146877732933 20.120901228280744 8 28.425243085498703 31.452370218689435 19.349523508893476 20.77286318691839 9 27.390347078879845 14.258540144607828 19.389551988471798 38.96156078804053 10 19.32900701061531 24.739244134457948 29.700309969587487 26.23143888533926 11 37.58025862354996 21.163133252829923 19.879299675114858 21.377308448505264 12 23.90628648032775 25.043582338886893 26.321480134459165 24.728651046326192 13 31.059573640378662 18.051474493944134 24.448908287904306 26.440043577772897 14 24.217717183419627 20.024498038300102 23.22336713482231 32.534417643457964 15 27.125672075128126 26.061797275689074 20.806042687101183 26.006487962081614 16 26.71573782837432 24.620650251235784 22.843659717134106 25.81995220325579 17 25.276112799342254 25.30174320223575 23.542894853555122 25.879249144866872 18 25.876418233383387 22.82825712347127 25.296446658169874 25.998877984975472 19 25.77194846767023 24.42419108226355 24.49937765607226 25.30448279399396 20 26.352741920411205 23.094697641911612 24.426200116219572 26.12636032145761 21 28.21983458344964 23.44070808097381 23.973710877488198 24.365746458088356 22 27.626347688895613 23.07527698033673 23.48429802983781 25.81407730092985 23 25.821504638585445 23.14486261099532 24.402883146366342 26.630749604052887 24 25.397294074780508 24.185085601588476 24.37767890219079 26.039941421440226 25 25.763090454318675 23.283820792953527 24.245234860635446 26.707853892092352 26 25.979457323400588 24.275309490158932 24.450034564516017 25.295198621924463 27 26.487803794091064 22.994946062004267 24.187520794262444 26.32972934964222 28 25.11800791498499 23.516290373592042 25.28898888060585 26.076712830817115 29 24.59760724055838 23.881021356335353 25.474489682545236 26.046881720561032 30 24.258537100616987 24.579860773946848 25.743700232652223 25.417901892783945 31 25.826892502376598 23.991853062909247 23.881964993496513 26.299289441217645 32 24.889739041709067 23.443082393830927 24.685456816271714 26.981721748188292 33 24.46994226462569 22.9834702165282 25.651558629851017 26.895028888995093 34 25.91824266755876 22.606228431422387 25.350903654341444 26.124625246677407 35 25.451659751226803 22.56869602433488 26.140636638508735 25.83900758592958 36 24.013587157524398 23.08090836339528 26.199537861310297 26.705966617770027 37 24.74849786661902 21.91795166203422 26.78520169939921 26.548348771947555 38 23.638597925642 21.142555874734906 28.11308182460464 27.105764375018452 39 24.112334220453732 20.909690575286874 28.385975603630992 26.5919996006284 40 23.263334734583786 21.723775486193826 28.65597759135701 26.356912187865372 41 22.27893853604131 21.915912188169774 29.74803974599723 26.05710952979169 42 22.90840540235319 22.176873523093693 29.305565237137543 25.60915583741558 43 21.166329443214504 21.666030979912403 29.578702535431294 27.588937041441802 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 338.0 1 359.0 2 380.0 3 1009.5 4 1639.0 5 1639.0 6 2105.5 7 2572.0 8 2545.5 9 2519.0 10 3811.5 11 5104.0 12 5104.0 13 8049.0 14 10994.0 15 16533.5 16 22073.0 17 20313.0 18 18553.0 19 18553.0 20 20802.0 21 23051.0 22 20191.5 23 17332.0 24 19300.5 25 21269.0 26 21269.0 27 24568.5 28 27868.0 29 32987.0 30 38106.0 31 44286.0 32 50466.0 33 50466.0 34 62694.0 35 74922.0 36 91324.0 37 107726.0 38 123070.0 39 138414.0 40 138414.0 41 150619.5 42 162825.0 43 176815.0 44 190805.0 45 205740.5 46 220676.0 47 220676.0 48 236781.0 49 252886.0 50 256212.5 51 259539.0 52 260958.5 53 262378.0 54 262378.0 55 251168.5 56 239959.0 57 230857.0 58 221755.0 59 217258.0 60 212761.0 61 212761.0 62 198777.0 63 184793.0 64 170728.5 65 156664.0 66 139054.5 67 121445.0 68 121445.0 69 102847.0 70 84249.0 71 71898.0 72 59547.0 73 45058.0 74 30569.0 75 30569.0 76 24426.5 77 18284.0 78 15588.5 79 12893.0 80 11815.0 81 10737.0 82 10737.0 83 8838.5 84 6940.0 85 6198.0 86 5456.0 87 4681.0 88 3906.0 89 3906.0 90 3011.0 91 2116.0 92 1259.5 93 403.0 94 286.0 95 169.0 96 169.0 97 116.0 98 63.0 99 40.0 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3285161.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.44530928240549 #Duplication Level Percentage of deduplicated Percentage of total 1 85.3293309836618 39.631471683969174 2 7.698252485673201 7.150954352622774 3 2.352711686669291 3.278172658190553 4 1.1841540460070066 2.1999360361922897 5 0.6817866803903089 1.5832896617676218 6 0.44804904044493915 1.2485865754290122 7 0.32627657223181467 1.0607811416236823 8 0.24847000272442304 0.923221289914877 9 0.18288580477076682 0.7644768989345905 >10 1.2556145642031542 11.412847666621015 >50 0.13993549820945603 4.545452473844288 >100 0.1248020872099071 11.703973154594578 >500 0.017808005817330972 5.870048140993742 >1k 0.009659693192373196 7.666713268444855 >5k 1.9713659576271828E-4 0.6462354319690263 >10k+ 6.571219858757276E-5 0.31383956488795206 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 10283 0.31301357832995097 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 8257 0.25134232386175287 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 7485 0.22784271455797753 No Hit GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA 5432 0.16534958256231583 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC 4505 0.1371317874527306 No Hit GGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCAC 4189 0.1275127763905635 No Hit TGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCC 3838 0.11682836853353609 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 3613 0.10997938913800571 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT 3310 0.10075609688535814 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 3.0439908424579495E-5 3 0.0 0.0 0.0 0.0 3.0439908424579495E-5 4 0.0 0.0 0.0 0.0 3.0439908424579495E-5 5 0.0 3.0439908424579495E-5 0.0 0.0 3.0439908424579495E-5 6 0.0 3.0439908424579495E-5 0.0 0.0 6.087981684915899E-5 7 0.0 6.087981684915899E-5 0.0 0.0 6.087981684915899E-5 8 0.0 6.087981684915899E-5 0.0 0.0 9.131972527373848E-5 9 0.0 6.087981684915899E-5 0.0 3.0439908424579495E-5 9.131972527373848E-5 10 0.0 6.087981684915899E-5 0.0 1.521995421228975E-4 9.131972527373848E-5 11 0.0 6.087981684915899E-5 0.0 1.8263945054747697E-4 9.131972527373848E-5 12 0.0 6.087981684915899E-5 0.0 4.2615871794411295E-4 9.131972527373848E-5 13 0.0 9.131972527373848E-5 0.0 6.392380769161694E-4 9.131972527373848E-5 14 0.0 9.131972527373848E-5 0.0 7.609977106144874E-4 9.131972527373848E-5 15 0.0 9.131972527373848E-5 0.0 0.0013089160622569184 9.131972527373848E-5 16 0.0 9.131972527373848E-5 0.0 0.002617832124513837 9.131972527373848E-5 17 0.0 9.131972527373848E-5 0.0 0.0037745486446478576 9.131972527373848E-5 18 0.0 9.131972527373848E-5 0.0 0.004261587179441129 9.131972527373848E-5 19 0.0 9.131972527373848E-5 0.0 0.004931265164781878 9.131972527373848E-5 20 0.0 9.131972527373848E-5 0.0 0.005418303699575151 9.131972527373848E-5 21 0.0 9.131972527373848E-5 0.0 0.006453260586010853 1.521995421228975E-4 22 0.0 9.131972527373848E-5 0.0 0.008279655091485623 1.521995421228975E-4 23 0.0 9.131972527373848E-5 0.0 0.011384525750792731 1.521995421228975E-4 24 0.0 1.2175963369831798E-4 0.0 0.017655146886256107 1.521995421228975E-4 25 0.0 1.2175963369831798E-4 0.0 0.021216616171931907 1.521995421228975E-4 26 0.0 1.2175963369831798E-4 0.0 0.03202278366265763 1.521995421228975E-4 27 0.0 1.2175963369831798E-4 0.0 0.07673900913836491 1.521995421228975E-4 28 0.0 1.2175963369831798E-4 0.0 0.26570996063815444 1.521995421228975E-4 29 0.0 1.521995421228975E-4 0.0 0.5207963932361306 1.521995421228975E-4 30 0.0 1.521995421228975E-4 0.0 0.8910065594958664 1.521995421228975E-4 31 0.0 1.521995421228975E-4 0.0 1.8449324097053386 1.521995421228975E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTATA 35 8.87292E-4 26.42857 2 GGTATCA 5315 0.0 19.42239 1 CTTATAC 6510 0.0 18.812595 37 TCTAGAC 535 0.0 18.327103 3 AGTCGGT 1610 0.0 18.155277 11 GCAGTCG 1640 0.0 17.935974 9 ATACACA 1405 0.0 17.907475 37 CTAGACA 595 0.0 17.722689 4 GTTCTAG 545 0.0 16.972477 1 CAGTCGG 1755 0.0 16.97151 10 GGCAGTC 1870 0.0 16.32353 8 GTCTAGA 495 0.0 15.69697 1 TCGGTGA 1840 0.0 15.584239 13 AAGACGG 1000 0.0 15.54 5 GTCGGTG 1860 0.0 15.516129 12 CTCTAGT 515 0.0 15.446603 27 TCTAGTT 540 0.0 15.416667 28 ACTGATC 565 0.0 15.38938 8 CTCTATG 2995 0.0 15.380633 1 CGTATCT 135 3.9783845E-7 15.074075 27 >>END_MODULE