Basic Statistics
Measure | Value |
---|---|
Filename | ERR1631386.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 961387 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1911 | 0.19877531108700242 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1623 | 0.16881859230465984 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 1380 | 0.14354261083205827 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 1298 | 0.13501326728986351 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 1003 | 0.10432843381489453 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 998 | 0.10380835189158996 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGTTT | 25 | 0.0054959017 | 29.6 | 8 |
CCGCTTA | 65 | 2.6820871E-6 | 22.76923 | 25 |
GGTATCA | 1120 | 0.0 | 21.96875 | 1 |
CGCTTAT | 70 | 5.1004918E-6 | 21.142857 | 26 |
CTTAACC | 45 | 0.0038253602 | 20.555555 | 3 |
ATCCCGT | 45 | 0.0038253602 | 20.555555 | 6 |
CGTGTTT | 45 | 0.0038253602 | 20.555555 | 10 |
CGTGCTT | 65 | 6.900627E-5 | 19.923077 | 10 |
TAGGACG | 140 | 3.6379788E-12 | 19.821428 | 4 |
CTTATAC | 1140 | 0.0 | 19.311403 | 37 |
AGACTAT | 50 | 0.007034065 | 18.5 | 6 |
TTAGCAA | 50 | 0.007034065 | 18.5 | 4 |
TGGAACG | 80 | 1.616222E-5 | 18.5 | 21 |
AACTCAC | 80 | 1.616222E-5 | 18.5 | 14 |
CGTTTGG | 110 | 3.849709E-8 | 18.5 | 28 |
AATCGTC | 50 | 0.007034065 | 18.5 | 28 |
ATAGATA | 155 | 2.0008883E-11 | 17.903227 | 32 |
GTGCTAT | 85 | 2.7223645E-5 | 17.411764 | 1 |
GGATAGA | 75 | 2.0668234E-4 | 17.266666 | 1 |
GCGTTTG | 120 | 1.04064384E-7 | 16.958334 | 27 |