ERR1631164.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1631164.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684859
Sequences flagged as poor quality	0
Sequence length	43
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGT	11101	1.6209175903361128	No Hit
ATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATG	8405	1.2272599177348913	No Hit
TCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTT	6643	0.969980682155013	RNA PCR Primer, Index 33 (95% over 22bp)
ACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCC	4396	0.6418839498349295	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	2490	0.363578488418784	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	2177	0.3178756503163425	No Hit
CTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTC	2067	0.30181395002474964	RNA PCR Primer, Index 33 (95% over 23bp)
CATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTC	1985	0.2898406825346531	No Hit
CACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCG	1156	0.16879386851892142	No Hit
GTTTTATTGTCTCTGCCTGGACTTCTAACATAGCATATGAGGT	962	0.14046686982283946	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	859	0.12542727773162066	No Hit
TTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTA	788	0.11506018027068346	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTACCG	20	0.001841417	37.0	5
CTTATAC	1280	0.0	31.074219	1
CCGTCTT	970	0.0	28.79897	37
CGTCTTC	235	0.0	28.340424	37
TTATACA	1405	0.0	28.309608	2
GCCGTCT	1005	0.0	27.796019	36
TATACAC	1475	0.0	27.718645	3
GATTACG	35	8.865719E-4	26.428572	1
GGTATCA	460	0.0	25.336958	1
ACGGGTA	60	1.3360877E-6	24.666668	15
GTATCAA	1270	0.0	24.472439	1
TGCCGTC	1205	0.0	23.3361	35
ATGCCGT	1245	0.0	22.289158	34
TATGCCG	1320	0.0	21.162878	33
GAGTGCG	45	0.0038242526	20.555555	7
CGGGTAA	55	5.140177E-4	20.181818	16
TTAACGG	55	5.140177E-4	20.181818	35
TTTGCCG	55	5.140177E-4	20.181818	9
GCCGAGT	70	1.2182842E-4	18.5	12
CCGAGTT	60	9.231618E-4	18.5	13