ERR1631141.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1631141.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1239882
Sequences flagged as poor quality	0
Sequence length	43
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGT	14960	1.2065664313216902	No Hit
ATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATG	11125	0.8972628040410296	No Hit
TCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTCTT	8725	0.7036959968771221	RNA PCR Primer, Index 41 (95% over 22bp)
ACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCC	6156	0.4964988603754228	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	4115	0.33188642144978314	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	3621	0.29204392030854553	No Hit
CTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTCTTC	2949	0.23784521430265138	RNA PCR Primer, Index 41 (95% over 23bp)
CATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTC	2799	0.22574728885490716	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGA	1825	0.14719142628088802	No Hit
GTTTTATTGTCTCTGCCTGGACTTCTAACATAGCATATGAGGT	1656	0.1335610969430962	No Hit
CACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCG	1579	0.1273508285465875	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	1362	0.10984916306551752	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTATAC	1920	0.0	31.122395	1
TATACAC	2165	0.0	28.284065	3
TTATACA	2170	0.0	27.963135	2
GGTATCA	820	0.0	26.39634	1
CGTCTTC	470	0.0	26.372341	37
CCGTCTT	1390	0.0	25.154676	37
GCCGTCT	1415	0.0	24.710247	36
GTATCAA	2290	0.0	23.993448	1
TTACGGG	90	3.8289727E-9	22.611113	3
TGCCGTC	1730	0.0	20.104048	35
ATTACGG	95	1.6763806E-7	19.473684	2
GATTACG	95	1.6763806E-7	19.473684	1
ATGCCGT	1835	0.0	18.852861	34
ATACACA	3435	0.0	18.25764	4
TACACAT	3375	0.0	18.253334	5
TATGCCG	1950	0.0	17.646154	33
GTCTTAT	105	4.798021E-7	17.619047	1
ATTAGAC	100	5.8785427E-6	16.65	3
AACGGCC	90	4.446409E-5	16.444445	37
GCGACCC	80	3.382833E-4	16.1875	21