ERR1631117.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1631117.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1121856
Sequences flagged as poor quality	0
Sequence length	43
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGT	7900	0.7041901990986366	No Hit
ATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATG	6268	0.5587169832848422	No Hit
TCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTCTT	5176	0.4613782874094358	RNA PCR Primer, Index 41 (95% over 22bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	4805	0.4283080894517657	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	4657	0.415115665468652	No Hit
GCTTTATTGAGCCTGTGTGGGAGCAGGGAGCAAGCTTTGGCCA	3956	0.3526299275486337	No Hit
ACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCC	3543	0.3158159335957556	No Hit
CTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTCTTC	1832	0.16330081579097494	RNA PCR Primer, Index 41 (95% over 23bp)
CATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTC	1789	0.15946788179588112	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGA	1781	0.1587547777967939	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	1621	0.14449269781504936	No Hit
GTGTGGGAGCAGGGAGCAAGCTTTGGCCAGAGCCAAGGGTGCA	1155	0.10295438986821838	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTGAG	25	1.2336067E-4	37.0	35
CGTTACG	25	0.0054962877	29.6	16
GGTATCA	780	0.0	29.410254	1
GATTACG	95	0.0	29.210527	1
CTTATAC	1170	0.0	28.46154	1
GTATCAA	2520	0.0	24.960316	1
TATACAC	1435	0.0	24.623693	3
TTATACA	1410	0.0	24.141844	2
CGTCTTC	345	0.0	24.130436	37
CCGTCTT	930	0.0	23.274193	37
CGGCATT	40	0.0019311585	23.125	27
TACGTTA	40	0.0019311585	23.125	19
GCCGTCT	940	0.0	22.829786	36
GCTTTAT	875	0.0	21.777143	1
TTACGGG	140	0.0	21.142857	3
ACGTCCT	45	0.0038257516	20.555555	35
GATAGCG	45	0.0038257516	20.555555	2
CGCTTAA	45	0.0038257516	20.555555	1
CGCCGTT	55	5.1429874E-4	20.181818	25
AGGACCG	65	6.90194E-5	19.923077	5