##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR1631104.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 612638 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.809874673134868 31.0 30.0 33.0 28.0 34.0 2 30.81486946614477 31.0 31.0 34.0 27.0 34.0 3 30.21239785974752 31.0 30.0 34.0 26.0 34.0 4 34.491605156715714 35.0 35.0 37.0 30.0 37.0 5 34.500060394556 35.0 35.0 37.0 30.0 37.0 6 34.73372040258685 35.0 35.0 37.0 32.0 37.0 7 34.770725942563146 35.0 35.0 37.0 32.0 37.0 8 34.82068040180335 35.0 35.0 37.0 32.0 37.0 9 36.52231660458541 38.0 35.0 39.0 32.0 39.0 10 36.26450530329493 38.0 35.0 39.0 32.0 39.0 11 36.35881874777601 38.0 35.0 39.0 32.0 39.0 12 36.27045824777438 38.0 35.0 39.0 32.0 39.0 13 36.37602140252482 38.0 35.0 39.0 32.0 39.0 14 37.31445323339395 39.0 36.0 40.0 32.0 41.0 15 37.34447259229757 39.0 36.0 40.0 32.0 41.0 16 37.32273218442212 39.0 36.0 40.0 32.0 41.0 17 37.26336107130149 39.0 36.0 40.0 32.0 41.0 18 37.32039148730572 39.0 36.0 40.0 32.0 41.0 19 37.351236782569806 39.0 36.0 40.0 32.0 41.0 20 37.343858853025765 39.0 36.0 40.0 32.0 41.0 21 37.28073021915063 39.0 36.0 40.0 32.0 41.0 22 37.119844018816984 39.0 36.0 40.0 31.0 41.0 23 37.136281131761336 39.0 36.0 40.0 31.0 41.0 24 37.03390256562603 39.0 36.0 40.0 31.0 41.0 25 36.95242704500863 39.0 36.0 40.0 31.0 41.0 26 36.830232535363464 39.0 36.0 40.0 31.0 41.0 27 36.71294141075154 39.0 36.0 40.0 30.0 41.0 28 36.7187605078366 38.0 36.0 40.0 30.0 41.0 29 36.58135473150539 38.0 35.0 40.0 30.0 41.0 30 36.49274122728267 38.0 35.0 40.0 30.0 41.0 31 36.48306667232526 38.0 35.0 40.0 30.0 41.0 32 36.258764555904136 38.0 35.0 40.0 30.0 41.0 33 36.240011230122846 38.0 35.0 40.0 30.0 41.0 34 36.22785233694286 38.0 35.0 40.0 30.0 41.0 35 36.157014419608316 38.0 35.0 40.0 29.0 41.0 36 36.20924591683833 38.0 35.0 40.0 30.0 41.0 37 36.19404934071997 38.0 35.0 40.0 30.0 41.0 38 36.125927546120224 38.0 35.0 40.0 29.0 41.0 39 36.019768607236244 38.0 35.0 40.0 29.0 41.0 40 35.889905621264106 38.0 34.0 40.0 29.0 41.0 41 35.8835576637427 38.0 34.0 40.0 29.0 41.0 42 35.835694161968405 38.0 34.0 40.0 29.0 41.0 43 34.995832775635854 38.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 13.0 10 17.0 11 21.0 12 18.0 13 17.0 14 11.0 15 17.0 16 19.0 17 12.0 18 45.0 19 70.0 20 128.0 21 262.0 22 515.0 23 904.0 24 1619.0 25 2615.0 26 4063.0 27 5755.0 28 8580.0 29 11455.0 30 15655.0 31 20196.0 32 26175.0 33 33422.0 34 43782.0 35 58547.0 36 80979.0 37 112193.0 38 134569.0 39 50961.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.01115177315152 24.31648053173326 16.12436708137595 23.548000613739273 2 13.906417819332134 22.74099876272774 40.864262419242685 22.488320998697436 3 15.44500994061746 29.204358854658054 35.123351799921 20.22727940480349 4 12.130328187281886 19.842712988747024 35.66853508923703 32.35842373473405 5 11.741191372392832 40.13381474867703 35.07111867040569 13.053875208524445 6 26.968780911402817 39.51730059186665 18.072336355237514 15.441582141493019 7 22.748833732155042 35.04777699065353 22.405890591181088 19.797498686010336 8 23.73375468057809 36.19102961291987 22.829958311433508 17.24525739506854 9 22.49533982547606 15.734577352367957 18.82220822084167 42.94787460131432 10 13.495081924399074 29.29625651689905 33.97618169294102 23.232479865760858 11 29.663194251744095 23.327152413007354 25.279365628642037 21.73028770660651 12 18.936794648715882 27.699718267557678 28.51977840094803 24.843708682778413 13 28.63550742853039 20.64840901152067 27.26618329258061 23.44990026736833 14 21.03395479875555 23.94823696865033 25.628511453745933 29.389296778848195 15 24.031483518815353 29.52885717177191 22.80988120227606 23.62977810713668 16 24.75687110495921 28.36667004005628 22.481791857508025 24.394666997476484 17 20.298447043768096 32.04926889941532 24.045847629432064 23.606436427384526 18 22.86097173208322 26.175000571299854 25.376160146775096 25.58786754984183 19 24.9267920044137 28.471952441735578 25.460712525178003 21.140543028672724 20 22.43739369742001 25.83173097326643 25.957743398222117 25.77313193109144 21 25.85556233860779 26.404499884107747 25.086755963554335 22.653181813730132 22 19.53665949549326 32.57747642163888 26.525941910230838 21.35992217263702 23 23.67140138221919 27.981287481351142 25.05672191408303 23.29058922234664 24 26.337902643975724 28.53952905304601 25.635040594935344 19.487527708042922 25 21.298385016926797 28.500843891498732 27.021177269447865 23.179593822126606 26 26.432738419751956 28.069757344467693 25.01020178310846 20.487302452671887 27 20.202958353872923 29.107564336524995 27.794554043333907 22.894923266268172 28 21.881600553671174 27.6961272399035 27.532082567519485 22.89018963890585 29 23.655078529245653 26.634652111034573 27.96839242750205 21.74187693221772 30 19.50091244748122 29.253653870638125 28.625387259686796 22.620046422193855 31 25.77819201551324 26.837055487906397 25.641569736124758 21.743182760455603 32 21.531801814448336 27.24839138283946 31.126374792291696 20.093432010420507 33 20.078088528625386 30.19564571574078 28.88655290726334 20.83971284837049 34 21.984597755934175 29.795899046418928 26.44041016064952 21.77909303699738 35 20.916103800286628 26.04996751752258 32.878633059000585 20.155295623190202 36 22.23515354907792 28.625387259686796 24.725367998720287 24.41409119251499 37 22.446697723614925 26.779109359850352 27.913547641510974 22.86064527502375 38 22.18373656221129 25.551141130651377 28.29109523078882 23.974027076348513 39 24.47726063352257 26.179407741602706 26.67921349965232 22.664118125222398 40 20.71076230987957 24.634449707657705 32.431876573114955 22.22291140934777 41 21.79965983174403 27.676213359275785 26.4144568244216 24.109669984558582 42 22.561284151489133 24.853339166032796 30.543485712606795 22.04189096987128 43 22.609599796290794 24.844524825427087 29.41557657213558 23.130298806146534 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 10.0 1 13.0 2 16.0 3 52.0 4 88.0 5 88.0 6 114.5 7 141.0 8 150.0 9 159.0 10 257.5 11 356.0 12 356.0 13 533.5 14 711.0 15 1894.0 16 3077.0 17 3304.0 18 3531.0 19 3531.0 20 3896.5 21 4262.0 22 5553.0 23 6844.0 24 8572.5 25 10301.0 26 10301.0 27 12720.5 28 15140.0 29 20257.0 30 25374.0 31 26429.0 32 27484.0 33 27484.0 34 29992.0 35 32500.0 36 33906.5 37 35313.0 38 39203.5 39 43094.0 40 43094.0 41 46219.5 42 49345.0 43 44358.5 44 39372.0 45 40130.5 46 40889.0 47 40889.0 48 42256.0 49 43623.0 50 55448.5 51 67274.0 52 56106.0 53 44938.0 54 44938.0 55 46158.5 56 47379.0 57 38910.0 58 30441.0 59 22052.0 60 13663.0 61 13663.0 62 11822.5 63 9982.0 64 8294.5 65 6607.0 66 5425.5 67 4244.0 68 4244.0 69 3415.5 70 2587.0 71 2185.0 72 1783.0 73 1406.5 74 1030.0 75 1030.0 76 769.5 77 509.0 78 424.0 79 339.0 80 234.0 81 129.0 82 129.0 83 90.5 84 52.0 85 44.0 86 36.0 87 24.5 88 13.0 89 13.0 90 7.5 91 2.0 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 612638.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.17904336237021 #Duplication Level Percentage of deduplicated Percentage of total 1 85.11225123285796 41.85739094049669 2 9.135907101100395 8.985903429592044 3 2.252863942674555 3.3238108057893676 4 0.9349263509544012 1.839151342168362 5 0.500812730336678 1.2314745490827255 6 0.32241664095549627 0.9513685179780058 7 0.22731198625808793 0.7825290220281106 8 0.16861829691777364 0.6633989228646564 9 0.13757918087301538 0.6089411251722058 >10 0.9396284732429993 9.061148820872797 >50 0.13218146108881298 4.605432871274899 >100 0.1202253485093982 12.197202356184953 >500 0.008634969782442966 2.916757809217586 >1k 0.00531382755842644 4.1517004565181885 >5k 3.321142224016525E-4 1.183166847909743 >10k+ 9.963426672049574E-4 5.640622182849666 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source ATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATG 13411 2.1890578122806614 No Hit TCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGTCTT 10718 1.7494833817033877 TruSeq Adapter, Index 12 (95% over 22bp) CTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGT 10406 1.698556080425961 No Hit ACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCC 7244 1.182427469402812 No Hit CTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGTCTTC 4182 0.6826217113531972 RNA PCR Primer, Index 12 (95% over 23bp) CATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGTC 3382 0.5520388875649241 No Hit CACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCG 1765 0.28809835498287734 No Hit GAATACACCTCTTAAATTTACAGGACTTAACATTTCAAACATC 1538 0.25104547873295485 No Hit GTTCTACAGCACACTACCAGAAGACAGCAGAAATGAAAAGCAT 1515 0.247291222549042 No Hit GCTTAGGACACAGAGCACATCAAAAGTTCCCAAAGAGGGCTTG 1338 0.2183997727858866 No Hit GTGATATAGTTATTTCCTGTCAGTGATTTTGGTCTGAATCAAC 1318 0.2151352021911798 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 1304 0.21285000277488497 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 1269 0.20713700423414805 No Hit ATCTTGAATAGTGATATAGTTATTTCCTGTCAGTGATTTTGGT 1190 0.1942419503850561 No Hit ATTGAAAGCTGAGTATTTTTAAGACAAAGGTTTCAGGAAGAAA 1165 0.19016123714167257 No Hit GTTTATAAAGTCCCTGGCGGCAAGATTATCAAGAATGGTGTTC 1154 0.18836572331458382 No Hit TTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTA 1119 0.18265272477384686 No Hit TCCCAGAAGAGGTCGCCATTGTTGAAGAACTTGGCCGCAGACA 1094 0.17857201153046334 No Hit GTTATTTCCTGTCAGTGATTTTGGTCTGAATCAACCAGTTTAT 1063 0.17351192710866775 No Hit ACTTTATTCCATTTGTAATTTTTGGCTACACAACACTAAAAGA 1023 0.1669827859192541 No Hit TATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTAT 985 0.16078010178931115 No Hit CTACCAGAAGACAGCAGAAATGAAAAGCATTTACTTTGTGGCT 939 0.15327158942148544 No Hit ACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGT 876 0.14298819204815894 No Hit GGAATAACATTGCCAAACGTCACGATGAATTTGAGAGACATGC 872 0.14233527792921757 No Hit CTCTTCACCTGCTCTGTTCTACAGCACACTACCAGAAGACAGC 869 0.14184559234001157 No Hit ATTCAAGATCATCTTCACAACATCACCTGCTAGCCACGTGGGA 846 0.1380913361560987 No Hit CTATATCACTATTCAAGATCATCTTCACAACATCACCTGCTAG 790 0.1289505384909196 No Hit CTTCTGGGAAATCTCGCCTTCCTCGGCCTTTCACCAGCCAAGC 754 0.12307431142044732 No Hit TATCTGGACTCCAGGCGTGCCCAAGATTTTGTGCAGTGGTTGA 731 0.11932005523653447 No Hit GGTAAAGGTCCCTTCAGCATGTCTCTCAAATTCATCGTGACGT 723 0.11801422699865174 No Hit GGTTGATGAATACCAAGAGGAACAGGAATAACATTGCCAAACG 719 0.11736131287971036 No Hit TCATCAACCACTGCACAAAATCTTGGGCACGCCTGGAGTCCAG 719 0.11736131287971036 No Hit CTTTATAAACTGGTTGATTCAGACCAAAATCACTGACAGGAAA 683 0.11148508580923809 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 4.896855892060238E-4 0.0 5 0.0 0.0 0.0 4.896855892060238E-4 0.0 6 0.0 0.0 0.0 4.896855892060238E-4 0.0 7 0.0 0.0 0.0 4.896855892060238E-4 0.0 8 0.0 0.0 0.0 4.896855892060238E-4 0.0 9 0.0 0.0 0.0 4.896855892060238E-4 0.0 10 0.0 0.0 0.0 4.896855892060238E-4 0.0 11 0.0 0.0 0.0 4.896855892060238E-4 0.0 12 0.0 0.0 0.0 4.896855892060238E-4 0.0 13 0.0 0.0 0.0 4.896855892060238E-4 0.0 14 0.0 0.0 0.0 4.896855892060238E-4 0.0 15 0.0 0.0 0.0 4.896855892060238E-4 0.0 16 0.0 0.0 0.0 4.896855892060238E-4 0.0 17 0.0 0.0 0.0 6.52914118941365E-4 0.0 18 0.0 0.0 0.0 6.52914118941365E-4 0.0 19 0.0 0.0 0.0 8.161426486767063E-4 0.0 20 0.0 0.0 0.0 8.161426486767063E-4 0.0 21 0.0 0.0 0.0 9.793711784120477E-4 0.0 22 0.0 0.0 0.0 0.0011425997081473888 0.0 23 0.0 0.0 0.0 0.0011425997081473888 0.0 24 0.0 0.0 0.0 0.0011425997081473888 0.0 25 0.0 0.0 0.0 0.00130582823788273 0.0 26 0.0 0.0 0.0 0.0019587423568240953 0.0 27 0.0 0.0 0.0 0.0022851994162947776 0.0 28 0.0 0.0 0.0 0.005712998540736944 0.0 29 0.0 0.0 0.0 0.01289505384909196 0.0 30 0.0 0.0 0.0 0.0233416797521538 0.0 31 0.0 0.0 0.0 0.056313842758692736 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 1355 0.0 33.450184 1 TTACGGG 35 2.3865003E-5 31.714287 3 CGTCTTC 475 0.0 29.6 37 GATTACG 25 0.0054943645 29.6 1 TTATACA 1550 0.0 29.599998 2 TATACAC 1615 0.0 29.095976 3 GGTATCA 325 0.0 29.03077 1 CCGTCTT 1550 0.0 26.019354 37 GCCGTCT 1590 0.0 25.364779 36 ATTACGG 40 0.0019301634 23.125 2 CTTATAG 40 0.0019301634 23.125 3 GGCGAAC 40 0.0019301634 23.125 29 GTATCAA 825 0.0 21.078787 1 TGCCGTC 1970 0.0 20.56599 35 CGAACCG 45 0.0038238 20.555555 31 GCGAACC 45 0.0038238 20.555555 30 TCGTAAA 45 0.0038238 20.555555 21 ATGCCGT 2100 0.0 19.46905 34 TATTGTC 210 0.0 18.5 5 ACGCGCA 60 9.2301023E-4 18.5 27 >>END_MODULE