##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR1630846.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 413256 Sequences flagged as poor quality 0 Sequence length 43 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.93540081692704 31.0 30.0 33.0 28.0 34.0 2 30.91836537158565 31.0 31.0 34.0 27.0 34.0 3 30.323121745358808 31.0 30.0 34.0 26.0 34.0 4 34.55041911067232 35.0 35.0 37.0 30.0 37.0 5 34.665311574423605 35.0 35.0 37.0 32.0 37.0 6 34.91882029541011 35.0 35.0 37.0 32.0 37.0 7 34.93719873395668 35.0 35.0 37.0 32.0 37.0 8 34.98037778035891 36.0 35.0 37.0 32.0 37.0 9 36.68002158468359 38.0 35.0 39.0 32.0 39.0 10 36.42539249278897 38.0 35.0 39.0 32.0 39.0 11 36.510717327758094 38.0 35.0 39.0 32.0 39.0 12 36.405148382600615 38.0 35.0 39.0 32.0 39.0 13 36.55506514121997 38.0 35.0 39.0 32.0 39.0 14 37.47031138083899 39.0 36.0 40.0 32.0 41.0 15 37.45804053661653 39.0 36.0 40.0 32.0 41.0 16 37.47354182395416 39.0 36.0 40.0 32.0 41.0 17 37.41646098302263 39.0 36.0 40.0 32.0 41.0 18 37.518971291402906 39.0 36.0 40.0 32.0 41.0 19 37.51184737789651 39.0 37.0 40.0 32.0 41.0 20 37.459165747139785 39.0 36.0 40.0 32.0 41.0 21 37.43700272954295 39.0 36.0 40.0 32.0 41.0 22 37.301655632344115 39.0 36.0 40.0 32.0 41.0 23 37.31987194378303 39.0 36.0 40.0 32.0 41.0 24 37.23351385097857 39.0 36.0 40.0 31.0 41.0 25 37.227713572216736 39.0 36.0 40.0 31.0 41.0 26 37.05331804014945 39.0 36.0 40.0 31.0 41.0 27 36.908974098379694 39.0 36.0 40.0 31.0 41.0 28 36.91732485432758 39.0 36.0 40.0 31.0 41.0 29 36.82617312271328 39.0 36.0 40.0 31.0 41.0 30 36.69963412509437 38.0 35.0 40.0 30.0 41.0 31 36.623707822753936 38.0 35.0 40.0 30.0 41.0 32 36.50484445476896 38.0 35.0 40.0 30.0 41.0 33 36.44335230462474 38.0 35.0 40.0 30.0 41.0 34 36.37341502603713 38.0 35.0 40.0 30.0 41.0 35 36.32710232882281 38.0 35.0 40.0 30.0 41.0 36 36.32883007143272 38.0 35.0 40.0 30.0 41.0 37 36.22937114040691 38.0 35.0 40.0 30.0 41.0 38 36.17551348316782 38.0 35.0 40.0 30.0 41.0 39 36.0814095863097 38.0 35.0 40.0 30.0 41.0 40 35.91182221189771 38.0 35.0 40.0 29.0 41.0 41 35.84696410941402 38.0 35.0 40.0 29.0 41.0 42 35.75366358867143 38.0 34.0 40.0 28.0 41.0 43 34.976317343244865 38.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 3.0 9 4.0 10 10.0 11 15.0 12 14.0 13 13.0 14 10.0 15 9.0 16 14.0 17 4.0 18 23.0 19 38.0 20 81.0 21 158.0 22 336.0 23 590.0 24 979.0 25 1686.0 26 2591.0 27 3873.0 28 5444.0 29 7578.0 30 10365.0 31 13036.0 32 16816.0 33 21774.0 34 28273.0 35 37074.0 36 51196.0 37 72388.0 38 93503.0 39 45353.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.72603906537352 23.98924637512825 16.369514296223166 23.915200263275064 2 14.869717560059625 21.861509572758774 39.88665621309793 23.382116654083667 3 14.664033916022998 31.212855953694564 32.56577036994018 21.55733976034226 4 10.878002981202934 19.584470642894477 37.288024856263426 32.24950151963915 5 11.811806725129218 39.326712739802936 34.99356331184544 13.86791722322241 6 26.132711926747586 40.5801730646379 17.287347310141897 15.999767698472617 7 24.049983545308475 32.99407631105174 22.80087887411193 20.155061269527845 8 25.27537410225139 33.11288886307761 22.779584567435197 18.832152467235804 9 23.249027237354085 14.00149060146737 18.667847532764196 44.08163462841435 10 15.472249646708095 26.561501829374528 33.20072787811913 24.765520645798247 11 30.72284491937201 23.206680604758308 23.972065741332248 22.09840873453743 12 19.902433358499334 28.805389395435277 25.627456104690555 25.664721141374834 13 30.025698356466695 19.452107168437966 25.358131521381424 25.164062953713923 14 22.355634279962057 22.79579727820044 25.28771512089359 29.56085332094392 15 25.507433648876244 28.58058927154113 21.754554077859726 24.157423001722904 16 25.239802930870937 25.24149679617477 22.984784249956444 26.53391602299785 17 20.719360396461273 30.72187699634125 23.23426641113499 25.32449619606249 18 23.151267011247263 24.050225526066168 25.97978008788741 26.818727374799156 19 23.94520587722864 26.79719108736473 27.778423059798286 21.47917997560834 20 22.32369281994696 26.620787115008614 25.708761639274446 25.346758425769984 21 27.21872156726097 24.516522446135085 26.040517258067634 22.224238728536307 22 22.52356892579902 30.191213194726757 25.602532086648473 21.682685792825755 23 23.652167179665874 24.843922411289853 26.436155796891033 25.06775461215324 24 22.022426776622723 30.776564647579224 26.162717540701163 21.03829103509689 25 21.862477495789534 27.895783727278005 28.07993108388021 22.16180769305225 26 26.216195288150683 26.15497415645508 28.246655825928723 19.38217472946551 27 20.990862806589618 31.348849139516428 26.358963935187873 21.30132411870608 28 22.770147317885282 24.20049557659175 29.550206167605552 23.479150937917417 29 24.542172406450238 25.988491395164253 28.064444315388045 21.404891882997465 30 20.900603983971195 25.839431248427125 29.608039568693496 23.651925198908184 31 25.9604216272722 26.086735582786456 25.302717927870376 22.65012486207097 32 23.42204347910254 25.066060746849413 30.242271134599374 21.26962463944867 33 22.088729504229825 24.750517838821455 29.685957372669726 23.474795284278994 34 21.12467816559227 29.62497822173181 27.351085041717482 21.899258570958438 35 21.162669144549625 24.56322473236928 34.63567377122171 19.63843235185938 36 26.135615695839864 25.247788295874713 23.836556517025766 24.780039491259657 37 21.475792245000676 25.030731556226648 29.33363338947287 24.159842809299807 38 21.911841570358327 24.161778655361328 28.247865729717176 25.678514044563176 39 24.74301643533306 24.619606248911087 27.358344464448187 23.27903285130766 40 20.32009214627253 24.109994773215636 34.229630059817644 21.340283020694194 41 22.802572739415762 25.186083202663724 25.78087190506611 26.230472152854407 42 21.339799059178812 24.71930232107943 31.326344929051242 22.614553690690517 43 23.964564337843854 22.911222099618637 30.11232746771977 23.01188609481774 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 6.0 1 6.5 2 7.0 3 44.5 4 82.0 5 82.0 6 129.0 7 176.0 8 181.5 9 187.0 10 303.0 11 419.0 12 419.0 13 663.5 14 908.0 15 2236.0 16 3564.0 17 3566.0 18 3568.0 19 3568.0 20 2922.0 21 2276.0 22 1828.0 23 1380.0 24 1733.0 25 2086.0 26 2086.0 27 2841.5 28 3597.0 29 5086.5 30 6576.0 31 8912.0 32 11248.0 33 11248.0 34 14523.0 35 17798.0 36 19954.5 37 22111.0 38 25664.5 39 29218.0 40 29218.0 41 31474.0 42 33730.0 43 35372.0 44 37014.0 45 37913.5 46 38813.0 47 38813.0 48 38510.0 49 38207.0 50 44884.0 51 51561.0 52 39073.0 53 26585.0 54 26585.0 55 33409.5 56 40234.0 57 30913.5 58 21593.0 59 15190.0 60 8787.0 61 8787.0 62 7396.5 63 6006.0 64 4398.0 65 2790.0 66 2146.0 67 1502.0 68 1502.0 69 1100.0 70 698.0 71 511.5 72 325.0 73 211.0 74 97.0 75 97.0 76 72.0 77 47.0 78 33.5 79 20.0 80 14.0 81 8.0 82 8.0 83 8.5 84 9.0 85 9.5 86 10.0 87 9.5 88 9.0 89 9.0 90 5.5 91 2.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 413256.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.887808041504538 #Duplication Level Percentage of deduplicated Percentage of total 1 70.11466273781308 13.243122906866445 2 9.686759336365384 3.6592330177904255 3 4.307219268464544 2.4406179220628377 4 2.487989238357568 1.8797065257370733 5 1.7500480430465697 1.6527285750237142 6 1.2811479085260393 1.451884546140891 7 1.0607904682595606 1.4025204715721007 8 0.8032797386458266 1.2137754805737848 9 0.6162321440010249 1.0475347000406527 >10 6.24303375824739 24.90683740828929 >50 1.0197937351867274 13.423398571345608 >100 0.6008583690987125 20.38881468145653 >500 0.016654922810838513 2.1974272605842384 >1k 0.006405739542630197 2.9618444741274175 >5k 0.003843443725578118 5.585641829761697 >10k+ 0.0012811479085260394 2.5449116286272915 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATG 10517 2.5449116286272915 No Hit TCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT 9239 2.2356602202992817 TruSeq Adapter, Index 1 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGT 7993 1.9341521962173567 No Hit ACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCC 5851 1.4158294132450586 No Hit CTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTC 3160 0.7646591943008693 RNA PCR Primer, Index 1 (95% over 22bp) CATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC 3059 0.7402191377741641 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 2431 0.588255221944751 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 2257 0.5461505701066651 No Hit CACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCG 1333 0.3225603500009679 No Hit GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGA 964 0.23326945041330316 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 888 0.21487891282885185 No Hit TTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTA 875 0.21173316297887992 No Hit ACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT 865 0.20931335540197846 No Hit TATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTAT 802 0.19406856766749908 No Hit GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC 715 0.17301624174845617 No Hit GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAA 650 0.15728749249859653 No Hit TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGG 614 0.14857618522175114 No Hit TATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCT 603 0.14591439688715954 No Hit ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAA 550 0.13308941672958166 No Hit ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGA 542 0.1311535706680605 No Hit AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC 512 0.12389414793735604 No Hit GATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGATCAC 501 0.12123235960276439 No Hit GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTC 495 0.11978047505662351 No Hit CCATAGGGTCTTCTCGTCTTGCTGTGTCATGCCCGCCTCTTCA 476 0.11518284066051067 No Hit ACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTT 465 0.11252105232591905 No Hit GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGAT 436 0.10550361035290474 No Hit GTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGA 436 0.10550361035290474 No Hit TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG 416 0.10066399519910177 No Hit GAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTG 414 0.10018003368372147 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 2.4198075769014848E-4 0.0 16 0.0 0.0 0.0 2.4198075769014848E-4 0.0 17 0.0 0.0 0.0 2.4198075769014848E-4 0.0 18 0.0 0.0 0.0 2.4198075769014848E-4 0.0 19 0.0 0.0 0.0 2.4198075769014848E-4 0.0 20 0.0 0.0 0.0 2.4198075769014848E-4 0.0 21 0.0 0.0 0.0 0.0014518845461408908 0.0 22 0.0 0.0 0.0 0.003387730607662079 0.0 23 0.0 0.0 0.0 0.0038716921230423757 0.0 24 0.0 0.0 0.0 0.0043556536384226725 0.0 25 0.0 0.0 0.0 0.00483961515380297 0.0 26 0.0 0.0 0.0 0.005323576669183267 0.0 27 0.0 0.0 0.0 0.006533480457634009 0.0 28 0.0 0.0 0.0 0.011615076369127127 0.0 29 0.0 0.0 0.0 0.022988171980564104 0.0 30 0.0 0.0 0.0 0.040894748049635096 0.0 31 0.0 0.0 0.0 0.07864374624929825 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCAACG 20 0.0018405723 37.0 2 TGATACA 25 1.2322576E-4 37.0 2 GATACAC 25 1.2322576E-4 37.0 3 TTGTATA 20 0.0018405723 37.0 2 CGTCTTC 395 0.0 35.126583 37 GCTCTAG 50 7.3086994E-9 33.300003 1 ACAGACA 50 7.3086994E-9 33.300003 17 CAGACAC 50 7.3086994E-9 33.300003 18 AAGTTGT 30 3.5955242E-4 30.833334 19 GATTACG 30 3.5955242E-4 30.833334 1 TTATACA 930 0.0 30.435486 2 CTTATAC 970 0.0 30.324743 1 GCAACGC 25 0.0054923207 29.6 3 CGCCGTT 25 0.0054923207 29.6 25 TTACCGG 25 0.0054923207 29.6 31 TACCGGG 25 0.0054923207 29.6 32 GGCTCGG 45 4.000094E-6 28.777777 25 AGACAGA 60 4.308822E-8 27.750002 15 CACCAGG 40 5.9310667E-5 27.75 20 GGTATCA 335 0.0 27.61194 1 >>END_MODULE