Basic Statistics
Measure | Value |
---|---|
Filename | ERR1630710.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1930106 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8011 | 0.41505492444456416 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6846 | 0.35469554521876 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5839 | 0.30252224489224944 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4439 | 0.22998736856939464 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3660 | 0.0 | 19.005465 | 1 |
CGAATTA | 130 | 2.5914233E-7 | 15.653846 | 15 |
CTTATAC | 1305 | 0.0 | 15.452106 | 37 |
ATGCCGT | 120 | 1.93706E-6 | 15.416666 | 34 |
CGAACTA | 110 | 1.4528063E-5 | 15.136364 | 24 |
TACGTTA | 135 | 3.9759107E-7 | 15.074073 | 19 |
CGGGTTT | 75 | 0.0041057486 | 14.8 | 37 |
TTATGCG | 75 | 0.0041057486 | 14.8 | 4 |
ATTACGT | 175 | 2.240995E-9 | 14.8 | 17 |
ATAGCGG | 155 | 1.2113378E-7 | 14.322581 | 37 |
TTGACGG | 310 | 0.0 | 14.322581 | 33 |
ACGAACC | 195 | 6.730261E-10 | 14.23077 | 26 |
CCTACAC | 275 | 0.0 | 14.127274 | 3 |
TTACACT | 250 | 0.0 | 14.059999 | 4 |
TCTTATA | 2030 | 0.0 | 13.852217 | 37 |
TACTCCG | 285 | 0.0 | 13.631579 | 5 |
ATACCGT | 245 | 7.2759576E-12 | 13.591836 | 6 |
AAGACGG | 450 | 0.0 | 13.566667 | 5 |
GACGGAC | 410 | 0.0 | 13.536585 | 7 |
CTAGCGG | 205 | 1.4242687E-9 | 13.536585 | 29 |