##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR1630625.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 558740 Sequences flagged as poor quality 0 Sequence length 43 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.088932240398037 31.0 31.0 33.0 28.0 34.0 2 31.162746536850772 31.0 31.0 34.0 28.0 34.0 3 31.149203565164477 31.0 31.0 34.0 28.0 34.0 4 34.95560188996671 35.0 35.0 37.0 32.0 37.0 5 34.805739700039375 35.0 35.0 37.0 32.0 37.0 6 34.94256362529978 35.0 35.0 37.0 32.0 37.0 7 34.876346780255574 35.0 35.0 37.0 32.0 37.0 8 34.95834914271396 36.0 35.0 37.0 32.0 37.0 9 36.375362422593696 38.0 35.0 39.0 32.0 39.0 10 36.182236818556035 38.0 35.0 39.0 32.0 39.0 11 36.46724415649497 38.0 35.0 39.0 32.0 39.0 12 36.38356480652897 38.0 35.0 39.0 32.0 39.0 13 36.499176719046424 38.0 35.0 39.0 32.0 39.0 14 37.37328811253893 39.0 36.0 40.0 32.0 41.0 15 37.28364713462433 39.0 36.0 40.0 32.0 41.0 16 37.17736514300032 39.0 36.0 40.0 32.0 41.0 17 37.31117156459176 39.0 36.0 40.0 32.0 41.0 18 37.364693775280095 39.0 36.0 40.0 32.0 41.0 19 37.449810287432435 39.0 36.0 40.0 32.0 41.0 20 37.43768479077925 39.0 36.0 40.0 32.0 41.0 21 37.37199949887246 39.0 36.0 40.0 32.0 41.0 22 37.26530944625407 39.0 36.0 40.0 32.0 41.0 23 37.20488599348534 39.0 36.0 40.0 32.0 41.0 24 37.09055732541074 39.0 36.0 40.0 32.0 41.0 25 36.971206643519345 39.0 35.0 40.0 31.0 41.0 26 36.57588323728389 38.0 35.0 40.0 31.0 41.0 27 36.33124172244693 38.0 35.0 40.0 30.0 41.0 28 36.133009986755916 38.0 35.0 40.0 30.0 41.0 29 35.91881912875398 38.0 35.0 40.0 30.0 41.0 30 35.64755521351613 38.0 34.0 40.0 29.0 41.0 31 35.37884346923435 37.0 34.0 40.0 28.0 41.0 32 35.10820059419408 37.0 34.0 40.0 27.0 41.0 33 34.89183699037119 37.0 33.0 40.0 27.0 41.0 34 34.65677059097254 37.0 33.0 40.0 25.0 41.0 35 34.40786412284783 37.0 33.0 40.0 24.0 41.0 36 34.18421269284462 37.0 33.0 40.0 23.0 41.0 37 33.72364964026202 36.0 33.0 40.0 21.0 41.0 38 33.37114579231843 36.0 33.0 40.0 19.0 41.0 39 33.0424669792748 36.0 33.0 39.0 18.0 41.0 40 32.639308086050754 35.0 32.0 39.0 15.0 41.0 41 32.203892687117445 35.0 31.0 39.0 12.0 40.0 42 31.813072269749796 35.0 30.0 39.0 10.0 40.0 43 30.979824247413823 35.0 29.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 3.0 12 1.0 13 5.0 14 4.0 15 8.0 16 19.0 17 36.0 18 68.0 19 200.0 20 374.0 21 707.0 22 1193.0 23 1951.0 24 3013.0 25 4641.0 26 6561.0 27 9025.0 28 12036.0 29 15648.0 30 18900.0 31 22877.0 32 28006.0 33 34292.0 34 42997.0 35 55118.0 36 78060.0 37 99873.0 38 91903.0 39 31216.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.55242151984823 22.227690875899345 13.457422056770591 17.762465547481835 2 17.878977699824606 24.878476572287646 33.86601997351183 23.37652575437592 3 23.34341554211261 28.914521960124567 28.996492107241295 18.74557039052153 4 13.925976303826468 18.07799692164513 32.99924830869456 34.99677846583384 5 10.714106740165372 43.92132297669757 32.207824748541356 13.156745534595698 6 30.002863585925475 33.91541683072627 17.738125067115295 18.343594516232955 7 24.82335254322225 35.24286788130436 23.523105558936177 16.410674016537207 8 29.879013494648675 31.9912660629273 20.583455632315566 17.546264810108458 9 27.417045495221394 12.232523177148584 24.378422880051545 35.97200844757848 10 19.68625836704013 30.672226796005297 30.461037334001507 19.18047750295307 11 28.671654078820204 24.87793964992662 21.655331639044995 24.795074632208184 12 20.2833160325017 32.49991051293983 29.497261695958766 17.719511758599708 13 28.185023445609765 21.643877295343096 30.944625407166125 19.226473851881018 14 22.127644342628056 23.773311379174572 32.16666070086266 21.93238357733472 15 26.081182660987224 26.148476930235887 30.095751154383077 17.674589254393815 16 20.398575366002074 26.59734402405412 33.113075849232196 19.8910047607116 17 18.266277696245123 30.036331746429468 31.92898306904822 19.768407488277195 18 16.86007803271647 25.841357339728678 36.0679385760819 21.230626051472957 19 18.691520206178186 27.265812363532234 37.80237677631814 16.24029065397144 20 19.10691913949243 24.94845545334145 38.89161327272077 17.053012134445357 21 20.51365572538211 26.210401975874287 36.40476787056592 16.871174428177685 22 19.962236460607798 26.670007516913053 36.075455489136274 17.29230053334288 23 19.09725453699395 27.346708665926904 36.46293445967713 17.093102337402012 24 17.716469198553888 29.28768300103805 35.40304971901063 17.59279808139743 25 17.72702867165408 28.195403944589614 36.73748076028207 17.340086623474246 26 17.923542255789812 28.94727422414719 36.307226974979415 16.82195654508358 27 17.3055446182482 29.354082399685005 35.53030031857393 17.81007266349286 28 16.7194043741275 28.893403013924186 37.89454844829437 16.492644163653935 29 17.736156351791532 29.56885134409564 36.80602784837313 15.888964455739702 30 16.40440992232523 30.096467050864444 36.85399291262483 16.645130114185488 31 16.644772165944804 30.858180907040843 35.96610230160719 16.530944625407166 32 15.509002398253212 30.81826967820453 36.52647027239861 17.146257651143646 33 15.619071482263664 31.132906181766117 36.43948884991231 16.808533486057918 34 16.7240577012564 30.509718294734583 35.84457887389483 16.921645130114186 35 15.963417689802053 31.43304578157998 35.11042703225114 17.493109496366827 36 16.50374055911515 31.6528260013602 33.6580520456742 18.18538139385045 37 15.78140100941404 30.77549486344275 34.85753660020761 18.585567526935606 38 16.152414360883416 30.362601567813297 34.940222643805704 18.544761427497583 39 15.891112145183806 31.083151376310987 34.794895658087846 18.230840820417367 40 15.725024161506246 31.08476214339407 34.80241257114221 18.387801123957477 41 15.703905215305866 30.81003686866879 34.02262232881125 19.46343558721409 42 15.313204710598846 31.398861724594624 33.96946701506962 19.318466549736907 43 15.898987006478862 30.500411640476788 33.59380033647135 20.006801016573004 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1289.0 1 880.5 2 472.0 3 1021.5 4 1571.0 5 1571.0 6 2481.5 7 3392.0 8 3663.0 9 3934.0 10 5663.5 11 7393.0 12 7393.0 13 13524.5 14 19656.0 15 25420.5 16 31185.0 17 27961.0 18 24737.0 19 24737.0 20 25936.0 21 27135.0 22 19904.0 23 12673.0 24 11370.5 25 10068.0 26 10068.0 27 10337.0 28 10606.0 29 11543.5 30 12481.0 31 14315.0 32 16149.0 33 16149.0 34 18930.0 35 21711.0 36 23492.5 37 25274.0 38 29285.0 39 33296.0 40 33296.0 41 35168.0 42 37040.0 43 39736.5 44 42433.0 45 41971.0 46 41509.0 47 41509.0 48 41665.5 49 41822.0 50 39176.5 51 36531.0 52 31181.0 53 25831.0 54 25831.0 55 23731.5 56 21632.0 57 17864.5 58 14097.0 59 12413.0 60 10729.0 61 10729.0 62 9531.0 63 8333.0 64 6840.5 65 5348.0 66 4368.0 67 3388.0 68 3388.0 69 2858.5 70 2329.0 71 1973.0 72 1617.0 73 1370.0 74 1123.0 75 1123.0 76 979.5 77 836.0 78 693.5 79 551.0 80 426.5 81 302.0 82 302.0 83 224.0 84 146.0 85 103.5 86 61.0 87 47.5 88 34.0 89 34.0 90 29.0 91 24.0 92 12.5 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 558740.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.72606245337806 #Duplication Level Percentage of deduplicated Percentage of total 1 81.66949488930074 30.810684647296004 2 8.042446425447862 6.068196722487864 3 2.803182249434226 3.1725908583106923 4 1.5120388507077138 2.281730884549328 5 1.0072258618239263 1.8999332883913496 6 0.6844009340953081 1.5491851429697927 7 0.5394760478874878 1.424661495229346 8 0.41190766681714036 1.2431723490694946 9 0.34566228819242556 1.1736429364912513 >10 2.5136562861669143 18.77700688592415 >50 0.27752836403388437 7.217308061699233 >100 0.17817225436249612 12.859603078220939 >500 0.010508819292157948 2.7101397238419938 >1k 0.002388368020944988 1.5117602329483666 >5k 9.553472083779951E-4 2.9103501921702373 >10k+ 9.553472083779951E-4 4.390033500399947 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12788 2.2887210509360347 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 11573 2.0712674947202636 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8926 1.597522998174464 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7224 1.2929090453520422 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2042 0.36546515373876937 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1973 0.3531159394351577 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1880 0.3364713462433332 No Hit GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT 1279 0.2289078999176719 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1215 0.2174535562157712 No Hit GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA 996 0.1782582238608297 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG 984 0.17611053441672334 No Hit TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 943 0.16877259548269322 No Hit GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG 833 0.14908544224505135 No Hit GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 779 0.13942083974657266 No Hit GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA 753 0.13476751261767547 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 723 0.12939828900740954 No Hit CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 704 0.12599778072090775 No Hit TCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGTCTT 693 0.12402906539714359 TruSeq Adapter, Index 12 (95% over 22bp) GAGTAATCCAGGTCGGTTTCTATCTACTTCAAATTCCTCCCTG 657 0.11758599706482444 No Hit CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG 653 0.11687010058345562 No Hit CTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAG 650 0.11633317822242904 No Hit CTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGT 643 0.11508035938003365 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 604 0.1081003686866879 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 596 0.10666857572395033 No Hit TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG 585 0.10469986040018613 No Hit GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA 560 0.10022550739163118 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 5.369223610265956E-4 0.0 3 0.0 1.789741203421985E-4 0.0 8.948706017109926E-4 0.0 4 0.0 1.789741203421985E-4 0.0 0.0010738447220531911 0.0 5 0.0 1.789741203421985E-4 0.0 0.0012528188423953897 0.0 6 0.0 1.789741203421985E-4 0.0 0.0012528188423953897 0.0 7 0.0 1.789741203421985E-4 0.0 0.0016107670830797867 0.0 8 0.0 1.789741203421985E-4 0.0 0.0017897412034219853 0.0 9 0.0 1.789741203421985E-4 0.0 0.003400508286501772 0.0 10 0.0 1.789741203421985E-4 0.0 0.005369223610265955 0.0 11 0.0 1.789741203421985E-4 0.0 0.006979990693345742 0.0 12 0.0 1.789741203421985E-4 0.0 0.011454343701900705 0.0 13 0.0 1.789741203421985E-4 0.0 0.013781007266349286 0.0 14 0.0 1.789741203421985E-4 0.0 0.017718437913877654 0.0 15 0.0 1.789741203421985E-4 0.0 0.026130221569960983 0.0 16 0.0 1.789741203421985E-4 0.0 0.04635429716862942 0.0 17 0.0 1.789741203421985E-4 0.0 0.073916311701328 0.0 18 0.0 3.57948240684397E-4 0.0 0.08250706947775352 0.0 19 0.0 5.369223610265956E-4 0.0 0.09915166266957798 0.0 20 0.0 5.369223610265956E-4 0.0 0.11293266993592727 0.0 21 0.0 5.369223610265956E-4 0.0 0.1449690374771808 0.0 22 0.0 5.369223610265956E-4 0.0 0.2076099795969503 0.0 23 0.0 5.369223610265956E-4 0.0 0.2895801267136772 0.0 24 0.0 5.369223610265956E-4 0.0 0.42488456169237926 0.0 25 0.0 5.369223610265956E-4 0.0 0.4596055410387658 0.0 26 0.0 5.369223610265956E-4 0.0 0.5132977771414253 0.0 27 0.0 5.369223610265956E-4 0.0 0.5578623331066328 0.0 28 0.0 5.369223610265956E-4 0.0 0.6156709739771629 0.0 29 0.0 5.369223610265956E-4 0.0 0.7051580341482622 0.0 30 0.0 5.369223610265956E-4 0.0 0.864623975373161 0.0 31 0.0 5.369223610265956E-4 0.0 1.3106274832659197 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCGC 20 0.0018411262 37.0 6 GCACACT 30 3.5971316E-4 30.833334 6 TAAGTTC 25 0.0054939566 29.599998 3 GGAACGC 40 5.9347483E-5 27.750002 8 GCCGTCT 125 0.0 25.16 36 GTCATGG 60 1.3353529E-6 24.666668 1 AAGGTCT 45 1.3220233E-4 24.666666 34 ACACTAC 45 1.3220233E-4 24.666666 8 CCGTCTT 140 0.0 23.785713 37 CAGCGTC 55 1.90039E-5 23.545454 2 AGCGTCA 55 1.90039E-5 23.545454 3 GCAGCGT 55 1.90039E-5 23.545454 1 CTGACTT 40 0.0019299515 23.125002 31 AGGTGTC 40 0.0019299515 23.125002 14 TCGCGCG 40 0.0019299515 23.125002 9 TGGTAAT 40 0.0019299515 23.125002 34 TTGGTAA 205 0.0 22.560976 33 GCCGAGT 75 3.7336576E-7 22.199999 12 GTAAACA 210 0.0 22.02381 36 TAAACAG 210 0.0 21.142857 37 >>END_MODULE