##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR1630520.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 296171 Sequences flagged as poor quality 0 Sequence length 43 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.846581873309677 33.0 31.0 34.0 30.0 34.0 2 31.846021386293728 33.0 31.0 34.0 30.0 34.0 3 31.823173099324375 33.0 31.0 34.0 30.0 34.0 4 35.532344490176285 37.0 35.0 37.0 33.0 37.0 5 35.58687042283005 37.0 35.0 37.0 33.0 37.0 6 35.71345945416668 37.0 35.0 37.0 35.0 37.0 7 35.63323215304672 37.0 35.0 37.0 33.0 37.0 8 35.74856755050292 37.0 35.0 37.0 35.0 37.0 9 37.271144035033814 39.0 37.0 39.0 34.0 39.0 10 37.232642628751634 39.0 37.0 39.0 34.0 39.0 11 37.42721941040818 39.0 37.0 39.0 34.0 39.0 12 37.4136934406137 39.0 37.0 39.0 34.0 39.0 13 37.4869011483231 39.0 37.0 39.0 35.0 39.0 14 38.48148198169301 40.0 38.0 41.0 34.0 41.0 15 38.41809967890172 40.0 38.0 41.0 34.0 41.0 16 38.27164712277705 40.0 38.0 41.0 34.0 41.0 17 38.48102954036688 40.0 38.0 41.0 34.0 41.0 18 38.62988948951788 40.0 38.0 41.0 34.0 41.0 19 38.75292314237383 40.0 38.0 41.0 35.0 41.0 20 38.79508797282651 40.0 38.0 41.0 35.0 41.0 21 38.71372956839123 40.0 38.0 41.0 35.0 41.0 22 38.57595105530251 40.0 38.0 41.0 34.0 41.0 23 38.45941702597486 40.0 38.0 41.0 34.0 41.0 24 38.343649445759375 40.0 37.0 41.0 34.0 41.0 25 38.22391118644297 40.0 37.0 41.0 34.0 41.0 26 37.7779289667118 40.0 36.0 41.0 33.0 41.0 27 37.46022736864852 39.0 35.0 41.0 33.0 41.0 28 37.23656266143546 39.0 35.0 41.0 33.0 41.0 29 36.91441093152267 39.0 35.0 41.0 32.0 41.0 30 36.54415185821704 38.0 35.0 40.0 32.0 41.0 31 36.0854742699319 38.0 35.0 40.0 31.0 41.0 32 35.638141479077966 37.0 35.0 40.0 30.0 41.0 33 35.263219558971 35.0 35.0 40.0 30.0 41.0 34 34.874305722032204 35.0 35.0 40.0 27.0 41.0 35 34.49302598836483 35.0 34.0 40.0 25.0 41.0 36 34.0265859925516 35.0 33.0 40.0 21.0 41.0 37 33.38305573469381 35.0 33.0 40.0 18.0 41.0 38 32.83519993517259 35.0 33.0 40.0 15.0 41.0 39 32.23924692154195 35.0 33.0 40.0 10.0 41.0 40 31.595135918101366 35.0 31.0 39.0 9.0 41.0 41 30.880606136319898 35.0 30.0 39.0 7.0 41.0 42 30.204307646596053 35.0 25.0 39.0 7.0 41.0 43 29.225737833886505 35.0 22.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 3.0 12 3.0 13 4.0 14 4.0 15 3.0 16 4.0 17 8.0 18 23.0 19 49.0 20 128.0 21 233.0 22 455.0 23 768.0 24 1204.0 25 1987.0 26 2837.0 27 4277.0 28 5945.0 29 7637.0 30 9214.0 31 10646.0 32 12867.0 33 15776.0 34 18987.0 35 22768.0 36 29810.0 37 53997.0 38 50125.0 39 46404.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 51.321027379453085 19.454639380628084 14.485550577200335 14.738782662718497 2 16.245007107380534 26.94558211303605 32.83339692272369 23.97601385685972 3 24.856248586120856 30.79268395622799 29.92224086760689 14.428826590044263 4 13.420287604120592 18.35088513054958 27.7957666348157 40.43306063051413 5 9.948644533056916 47.12277704434263 28.478142694591973 14.450435728008483 6 28.927882878472232 28.736101779039814 20.579665125890113 21.756350216597845 7 22.654817656016288 38.27045862018901 22.01397165826499 17.060752065529712 8 35.65912935432571 28.579097886018552 20.1170945163436 15.644678243312141 9 29.44211283346445 10.5604532516688 24.341005702786568 35.65642821208018 10 20.79406829162882 33.9888105182479 24.88089650911129 20.336224681011984 11 25.226980359319445 27.176192132247923 19.199381438425775 28.397446070006854 12 19.12847645448069 35.96908542699994 28.98224336616347 15.9201947523559 13 30.536750728464302 20.43515401575441 32.3255821805646 16.702513075216682 14 22.80945804957271 24.962268419257793 34.3592046486658 17.86906888250369 15 28.0030793021599 24.83835351874424 31.416310172164053 15.742257006931807 16 18.36439084177722 25.878968568833542 36.257770004490645 19.49887058489859 17 15.12909771719716 33.14369063817862 34.29133844974694 17.43587319487728 18 14.381894243528231 24.317708350918895 39.791876989982136 21.508520415570732 19 14.914019265897066 30.116047823723456 42.35694919489079 12.612983715488687 20 16.313886234641476 24.743138254589407 44.04651366946798 14.89646184130114 21 19.64540755171843 25.36676447052547 41.010092142714846 13.977735835041244 22 18.142897177643995 27.080639225312403 39.40460072052969 15.371862876513905 23 16.420918996120484 28.00172873103714 39.80605798677115 15.771294286071221 24 14.246499488471187 30.306478352033118 40.93716130208562 14.509860857410079 25 13.508412369880912 30.244689723166683 40.816960472159664 15.429937434792738 26 15.420145794152704 30.11402196703931 40.24735710113414 14.218475137673844 27 13.364914188087287 31.844441218080092 39.942803312950964 14.847841280881651 28 13.12181138598985 31.3811953229722 41.664781494474475 13.83221179656347 29 12.566051368972655 32.93367682858889 41.02832485287215 13.471946949566298 30 12.024472348744474 33.36856073011875 41.87614587518697 12.730821045949806 31 11.94985329421179 34.013796084019035 40.21494339418782 13.821407227581364 32 11.26308787828653 34.68435464647113 40.79231254916923 13.260244926073113 33 12.088286834295053 34.30113009038697 40.862204604772245 12.748378470545733 34 11.997123283508513 35.21614202605927 38.16275057314862 14.623984117283594 35 11.653402932765193 35.09053891164226 39.3377474499529 13.918310705639648 36 11.572368665399381 35.7742655425413 37.24233635298527 15.411029439074047 37 11.661506359501775 35.73712483666531 37.71773738819804 14.883631415634888 38 12.009616066394077 34.056001431605395 38.052679026643396 15.881703475357142 39 12.740950329370532 34.2741186679317 37.79910929834453 15.185821704353227 40 11.951879150895934 34.21503118131079 38.093533803106986 15.739555864686281 41 11.493697897498405 35.25497094583872 36.458667459001724 16.792663697661148 42 11.742202984086896 34.47467847966209 37.05933396585081 16.72378457040021 43 10.945028378875717 35.49807374793616 36.325636203409516 17.231261669778608 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 29.0 1 95.5 2 162.0 3 755.0 4 1348.0 5 1348.0 6 2141.0 7 2934.0 8 3138.0 9 3342.0 10 4895.5 11 6449.0 12 6449.0 13 11480.0 14 16511.0 15 22603.5 16 28696.0 17 25419.0 18 22142.0 19 22142.0 20 23793.5 21 25445.0 22 18381.5 23 11318.0 24 9895.5 25 8473.0 26 8473.0 27 8650.5 28 8828.0 29 8674.0 30 8520.0 31 8242.0 32 7964.0 33 7964.0 34 7311.5 35 6659.0 36 6262.5 37 5866.0 38 6473.5 39 7081.0 40 7081.0 41 8104.5 42 9128.0 43 10086.5 44 11045.0 45 13401.0 46 15757.0 47 15757.0 48 17660.0 49 19563.0 50 18643.0 51 17723.0 52 13589.0 53 9455.0 54 9455.0 55 9472.0 56 9489.0 57 8682.5 58 7876.0 59 6682.0 60 5488.0 61 5488.0 62 5007.0 63 4526.0 64 4167.0 65 3808.0 66 3436.5 67 3065.0 68 3065.0 69 2791.0 70 2517.0 71 2254.0 72 1991.0 73 1681.0 74 1371.0 75 1371.0 76 1121.0 77 871.0 78 644.0 79 417.0 80 303.5 81 190.0 82 190.0 83 135.5 84 81.0 85 55.5 86 30.0 87 18.5 88 7.0 89 7.0 90 6.5 91 6.0 92 3.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 296171.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.82931993657638 #Duplication Level Percentage of deduplicated Percentage of total 1 78.22814127375705 28.810892430148943 2 11.412436881393088 8.4062457832162 3 3.622964161583283 4.0029391867710284 4 1.7257366564018235 2.5423082977960134 5 1.03734188611827 1.9102298103730673 6 0.6869776300307949 1.518055135540509 7 0.49505779333385663 1.2762849300451682 8 0.33599662765712507 0.9899621838075989 9 0.27038667855142806 0.8962341741862901 >10 1.830078316570976 13.299616344813996 >50 0.1878787559659455 4.800778098183406 >100 0.13916944886366334 9.734453508167357 >500 0.015905079870132954 3.9872854623133893 >1k 0.007952539935066477 4.069293720834939 >5k 0.0019881349837666193 5.140160489475712 >10k+ 0.0019881349837666193 8.615260444326386 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 11984 4.046311083799562 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 11548 3.899098831418336 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 7992 2.69844110328155 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6048 2.0420635376184704 No Hit CTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGT 1773 0.5986406501649385 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1625 0.5486695186226875 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1594 0.5382025924212701 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1509 0.509502956062545 No Hit TCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGTCTT 1235 0.41698883415324256 Illumina PCR Primer Index 10 (95% over 21bp) GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA 1228 0.4146253346884064 No Hit ACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA 1108 0.37410820100550024 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1043 0.3521614202605927 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG 965 0.3258252833667037 No Hit GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT 849 0.2866587208065611 No Hit GGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA 835 0.28193172187688864 No Hit GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA 825 0.27855529406997986 No Hit TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 743 0.2508685860533273 No Hit TATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAAAA 734 0.24782980102710933 No Hit ATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATG 668 0.22554537750151096 No Hit ACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCC 662 0.22351952081736565 No Hit GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 635 0.21440316573871177 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 611 0.20629973900213053 No Hit CTCTATGGGCAGTCGGTGATTCCTCGCCTTATTGATATGCCCA 607 0.20494916787936698 No Hit CATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGTC 598 0.20191038285314902 No Hit GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA 559 0.18874231440620454 No Hit CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 546 0.18435295825722303 No Hit GAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 541 0.1826647443537686 No Hit GTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAAA 513 0.17321074649442383 No Hit GAACAGTGGTATCAACGCAGAAAAAAAAAAAAAAAAAAAAAAA 495 0.1671331764419879 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 483 0.16308146307369728 No Hit GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAA 470 0.1586921069247158 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC 443 0.1495757518460619 No Hit GTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA 429 0.14484875291638952 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT 427 0.14417346735500775 No Hit CCCATAGAGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 384 0.12965482778529971 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC 350 0.11817497324180964 No Hit GAGTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAA 348 0.11749968768042787 No Hit ACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAA 332 0.11209740318937371 No Hit CTCTATGGGCATATCAATAAGGCGAGGAATCACCGACTGCCCA 327 0.11040918928591928 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT 326 0.1100715465052284 No Hit GTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 326 0.1100715465052284 No Hit GTACATGGGAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAA 307 0.1036563336721016 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.3764278069088464E-4 0.0 2 0.0 3.3764278069088464E-4 0.0 0.001012928342072654 0.0 3 0.0 3.3764278069088464E-4 0.0 0.002025856684145308 0.0 4 0.0 3.3764278069088464E-4 0.0 0.002025856684145308 0.0 5 0.0 3.3764278069088464E-4 0.0 0.002025856684145308 0.0 6 0.0 3.3764278069088464E-4 0.0 0.002025856684145308 0.0 7 0.0 3.3764278069088464E-4 0.0 0.0023634994648361928 0.0 8 0.0 3.3764278069088464E-4 0.0 0.002701142245527077 0.0 9 0.0 3.3764278069088464E-4 0.0 0.003038785026217962 0.0 10 0.0 3.3764278069088464E-4 0.0 0.004051713368290616 0.0 11 0.0 3.3764278069088464E-4 0.0 0.006415212833126809 0.0 12 0.0 6.752855613817693E-4 0.0 0.010466926201417424 0.0 13 0.0 6.752855613817693E-4 0.0 0.011817497324180963 0.0 14 0.0 6.752855613817693E-4 0.0 0.018907995718689542 0.0 15 0.0 6.752855613817693E-4 0.0 0.025660851332507235 0.0 16 0.0 6.752855613817693E-4 0.0 0.046932346516032966 0.0 17 0.0 0.001012928342072654 0.0 0.08170955292719409 0.0 18 0.0 0.001012928342072654 0.0 0.09285176468999327 0.0 19 0.0 0.001012928342072654 0.0 0.11716204489973697 0.0 20 0.0 0.001012928342072654 0.0 0.13269361281151767 0.0 21 0.0 0.001012928342072654 0.0 0.166795533661297 0.0 22 0.0 0.001012928342072654 0.0 0.24276515931674608 0.0 23 0.0 0.001012928342072654 0.0 0.33865570903295733 0.0 24 0.0 0.001012928342072654 0.0 0.5186193111411989 0.0 25 0.0 0.001012928342072654 0.0 0.5544094458944326 0.0 26 0.0 0.001012928342072654 0.0 0.6300414287691908 0.0 27 0.0 0.001012928342072654 0.0 0.6813631314342052 0.0 28 0.0 0.001012928342072654 0.0 0.7576703998703451 0.0 29 0.0 0.001012928342072654 0.0 0.8744948019893912 0.0 30 0.0 0.001012928342072654 0.0 1.0821451121142853 0.0 31 0.0 0.001012928342072654 0.0 1.6757211205688605 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGAG 20 0.0018397304 37.0 2 TTCTGAC 20 0.0018397304 37.0 26 ACTGTGC 30 3.5930853E-4 30.833334 8 AGCGTGG 25 0.005489838 29.6 18 TGTGCGC 25 0.005489838 29.6 10 GATACAC 55 6.235405E-7 26.90909 3 CCGTCTT 165 0.0 26.90909 37 TAGTACT 35 8.8537915E-4 26.42857 4 GCCGTCT 170 0.0 26.117647 36 ATGGGTC 45 1.3199744E-4 24.666666 5 AGTGGCT 70 5.0808485E-6 21.142857 27 ATACACT 70 5.0808485E-6 21.142857 4 CGTCTTC 45 0.0038192053 20.555555 37 GTGCTGG 45 0.0038192053 20.555555 1 TACACTG 45 0.0038192053 20.555555 5 GTGTATA 55 5.1307137E-4 20.181818 9 ACAGAGG 55 5.1307137E-4 20.181818 3 GAAACGC 75 9.227742E-6 19.733334 9 ATGCCCC 75 9.227742E-6 19.733334 37 TGCCGTC 230 0.0 19.304348 35 >>END_MODULE