Basic Statistics
Measure | Value |
---|---|
Filename | ERR1630047.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2170822 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6819 | 0.3141206418582454 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6409 | 0.29523378701708386 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 4941 | 0.22760963358580297 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3437 | 0.15832712216846892 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1675 | 0.0 | 27.280596 | 1 |
CGAATTA | 265 | 0.0 | 18.150942 | 15 |
GTATCAA | 2810 | 0.0 | 16.261566 | 2 |
GCTTAGG | 585 | 0.0 | 15.179486 | 1 |
CCGAATT | 345 | 0.0 | 15.014493 | 14 |
CGACCAA | 200 | 6.184564E-11 | 14.8 | 12 |
CGTGCGA | 165 | 1.6472768E-8 | 14.575757 | 10 |
GTACTAG | 140 | 6.001428E-7 | 14.535714 | 1 |
TAGGACA | 740 | 0.0 | 14.250001 | 4 |
TTAGGAC | 710 | 0.0 | 14.070423 | 3 |
TGTCCGA | 490 | 0.0 | 13.969387 | 12 |
CTAGCAC | 505 | 0.0 | 13.920793 | 3 |
GTCCTAT | 190 | 7.1358954E-9 | 13.631579 | 1 |
ACGCAAT | 275 | 0.0 | 13.454545 | 11 |
TACGCAT | 110 | 2.4579375E-4 | 13.454545 | 28 |
TAGAACA | 620 | 0.0 | 13.42742 | 4 |
GCTCTAT | 125 | 4.8482565E-5 | 13.320001 | 1 |
TCGATTG | 85 | 0.00940825 | 13.058824 | 8 |
TCGTACT | 85 | 0.00940825 | 13.058824 | 4 |
GTTCTAG | 730 | 0.0 | 12.924658 | 1 |