ERR1356954_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1356954_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1604851
Sequences flagged as poor quality	0
Sequence length	75
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCTGGTCGTCTACCAGCTCGATAATTG	5502	0.34283556542009197	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA	3659	0.2279962438880619	RNA PCR Primer, Index 46 (96% over 28bp)
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGC	3018	0.18805484122825109	No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGGCTAGACTAGCGTACGAGCACTATGG	2360	0.14705415019836732	No Hit
GTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCA	2214	0.13795673243185816	No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTTCCGCCCCTGGCGCTCTAGGCTA	2112	0.13160100221142024	No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACCGCCCTTAGACGTCTTGGTATACGGA	2085	0.12991860303542196	No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCT	1796	0.11191070074418125	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG	1730	0.10779816942507435	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG	1643	0.10237710541352438	No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAGTCAACCAGATGTGTG	1637	0.10200323892996921	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGTC	30	6.307513E-4	46.006943	54
GGCGAGC	40	4.9984606E-5	43.131508	51
CAATGCG	770	0.0	40.75982	19
TCAAGAC	180	0.0	40.24353	3
CGACGAG	805	0.0	39.84453	24
ATCGTCA	825	0.0	38.9174	10
GAGTCCT	820	0.0	38.695065	28
GCGCGAG	55	7.360173E-6	37.663174	11
GCAGCGA	95	2.2009772E-10	36.305424	15
TGGTCGT	1350	0.0	35.783176	51
ACCCTTG	445	0.0	34.911404	7
GGCGCCA	40	0.0025875878	34.52458	12
CCAAATG	40	0.0025947192	34.505207	48
ACGACAG	40	0.0025947192	34.505207	45
CGCAGCG	100	3.8198777E-10	34.490158	14
ATCGCCG	100	3.8198777E-10	34.48908	39
GTCAGCG	1475	0.0	33.670696	43
CTACACT	905	0.0	33.536343	33
GCTCGAT	1395	0.0	33.39109	64
GCTCGTC	1540	0.0	32.249527	39