FastQCFastQC Report
Mon 6 Jun 2016
ERR1391392.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391392.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1090709
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG1053.6379788E-1227.8454520
CTCGTAT608.217792E-626.2389842
CGTATGC651.5286203E-524.22059844
AGATCGG1052.3828761E-923.55721317
ATCGGAA1152.6739144E-1023.46840519
GGCCGCA500.002270066922.49055722
GATCGGA1104.0708983E-922.49055518
ATCTCGT602.4744184E-422.49055340
GCGGTTC1305.0931703E-1122.48849328
AGACCGG602.4759545E-422.48849328
CGGGACA602.4759545E-422.48849332
AGCGGTT1401.382432E-1020.88025727
ACCGGGA654.2526954E-420.75860830
CCGAGAC1251.7755156E-819.79168945
CGGTTCA1503.4742698E-1019.49002529
GAGCGGT1503.4742698E-1019.48823726
TCTCGTA707.002914E-419.27761841
TATCTCG707.0050755E-419.27673339
GCGCTCC707.007237E-419.275858
GAGACCG750.00111467717.98914327