Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391392.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1090709 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 105 | 3.6379788E-12 | 27.84545 | 20 |
CTCGTAT | 60 | 8.217792E-6 | 26.23898 | 42 |
CGTATGC | 65 | 1.5286203E-5 | 24.220598 | 44 |
AGATCGG | 105 | 2.3828761E-9 | 23.557213 | 17 |
ATCGGAA | 115 | 2.6739144E-10 | 23.468405 | 19 |
GGCCGCA | 50 | 0.0022700669 | 22.490557 | 22 |
GATCGGA | 110 | 4.0708983E-9 | 22.490555 | 18 |
ATCTCGT | 60 | 2.4744184E-4 | 22.490553 | 40 |
GCGGTTC | 130 | 5.0931703E-11 | 22.488493 | 28 |
AGACCGG | 60 | 2.4759545E-4 | 22.488493 | 28 |
CGGGACA | 60 | 2.4759545E-4 | 22.488493 | 32 |
AGCGGTT | 140 | 1.382432E-10 | 20.880257 | 27 |
ACCGGGA | 65 | 4.2526954E-4 | 20.758608 | 30 |
CCGAGAC | 125 | 1.7755156E-8 | 19.791689 | 45 |
CGGTTCA | 150 | 3.4742698E-10 | 19.490025 | 29 |
GAGCGGT | 150 | 3.4742698E-10 | 19.488237 | 26 |
TCTCGTA | 70 | 7.002914E-4 | 19.277618 | 41 |
TATCTCG | 70 | 7.0050755E-4 | 19.276733 | 39 |
GCGCTCC | 70 | 7.007237E-4 | 19.27585 | 8 |
GAGACCG | 75 | 0.001114677 | 17.989143 | 27 |